| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5992690 | 54 (1.100) | 3 (0.070) | 3/246 | NT | 5.3% | coding (681/1263 nt) | opdB | proline‑specific outer membrane porin D |
| ? | NC_002947 | = 5992722 | 57 (1.240) | coding (713/1263 nt) | opdB | proline‑specific outer membrane porin D | |||||
CAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCGGGCAACTGGAAAACACCTGGCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5992537‑5992690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccagTTGCCTTGGGCCAGGTTCAGGTTGAGGTAGGCCTGGCGCCAGGTGTTTTCCAGTTGCCCGGCATACAGTGCGGCGCCGAACGGCCCGTTGGGTGCGAAGGTGGCACCGGCCAGG < NC_002947/5992722‑5992609 CAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCGGGCAACTGGAAAACACCTGGC > 3:223388/1‑149CAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCGGGCAACTGGAAAACACCTGGC < 4:162530/149‑1CAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCGGGCAACTGGAAAACACCTGGC < 7:284760/149‑1 AGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCGGGCAACTGGAAAACACCTGGCGCCAG < 4:80475/149‑1 CAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCGGGCAACTGGAAAACACCTGGCGCCAG > 1:130051/1‑142 CAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCGGGCAACTGGAAAACACCTGGCGCCAG < 2:130051/142‑1 CAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCGGGCAACTGGAAAACACCTGGCGCCAGTTGCCTTGGGCCAGGTTCAGGTTGAGGTAGGCCTGGCGCCAGGTGTTTTCCA < 3:58527/149‑1 CATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCGGGCAACTGGAAAACACCTGGCGCCAGTTGCCTTGGGCCAGGTTCAGGTTGAGGTAGGCCTGGCGC > 3:58492/1‑127 CATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCGGGCAACTGGAAAACACCTGGCGCCAGTTGCCTTGGGCCAGGTTCAGGTTGAGGTAGGCCTGGCGC < 4:58492/127‑1 CAGTTGCCTTGGGCCAGGTTCAGGTTGAGGTAGGCCTGGCGCCAGGTGTTTTCCAGTTGCCCGGCATACAGTGCGGCGCCGAACGGCCCGTTGGGTGCGAAGGTGGCACCGGCCAGG > 7:70635/1‑117 CAGTTGCCTTGGGCCAGGTTCAGGTTGAGGTAGGCCTGGCGCCAGGTGTTTTCCAGTTGCCCGGCATACAGTGCGGCGCCGAACGGCCCGTTGGGTGCGAAGGTGGCACCGGCCAGG < 8:70635/117‑1 CAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCGGGCAACTGGAAAACACCTGGCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5992537‑5992690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccagTTGCCTTGGGCCAGGTTCAGGTTGAGGTAGGCCTGGCGCCAGGTGTTTTCCAGTTGCCCGGCATACAGTGCGGCGCCGAACGGCCCGTTGGGTGCGAAGGTGGCACCGGCCAGG < NC_002947/5992722‑5992609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |