New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	867920 =	39 (0.800)	4 (0.090)	4/236	NT	8.8%	intergenic (+18/+159)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	868010 =	48 (1.090)					intergenic (+108/+69)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase

GCTTCTTCGTCGAAGCTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTG  >  NC_002947/867775‑868064                                                                                                                                                  |                                                                                                                                                   ccacaagatcagtgccgataacgacgcggccctggacctggcagagagcagcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgcCctc                                                                                                                                                 <  7:15362‑M1/4‑1 (MQ=255)  cttcttCGTCGAAGCTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCctct                                                                                                                                                <  5:300516/149‑1 (MQ=255)   acaagatcagtgccgataacgccgcggccctggacctggcagagagcagcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgcCCTCtt                                                                                                                                               <  6:309149‑M1/6‑1 (MQ=255)      ttcGTCGAAGCTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCTATAAACCCCGTGGCTGATCTGTACCCAGTGCCGGCCTAGTcgc                                                                                                                                            >  5:25516/1‑149 (MQ=255)             aaGCTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGgcgcg                                                                                                                                     >  2:220853/1‑149 (MQ=255)                cTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGccc                                                                                                                                  >  5:257353/1‑149 (MQ=255)                cTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGccc                                                                                                                                  <  4:285750/149‑1 (MQ=255)                cTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGccc                                                                                                                                  <  5:299993/149‑1 (MQ=255)                  ggCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCg                                                                                                                                 >  4:44902/1‑148 (MQ=255)                  ggCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGc                                                                                                                                >  3:90771/1‑149 (MQ=255)                   gCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCt                                                                                                                               <  6:257353/149‑1 (MQ=255)                    cctggacctggaCGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTc                                                                                                                              <  6:45258/149‑1 (MQ=255)                              gacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGa                                                                                                                      <  2:242387/147‑1 (MQ=255)                              gacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGt                                                                                                                    >  4:113892/1‑149 (MQ=255)                              gacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGt                                                                                                                    >  6:77336/1‑149 (MQ=255)                              gacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGt                                                                                                                    >  7:211310/1‑149 (MQ=255)                                          gAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGt                                                                                                                    <  6:284306/137‑1 (MQ=255)                                          gAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGt                                                                                                                    >  5:284306/1‑137 (MQ=255)                                          gAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTAGCGGGCGCGCCCCCAACCCCCGGCGTAGcgccgccc                                                                                                          >  8:56445/1‑145 (MQ=255)                                              aCGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCgg                                                                                                   <  8:211310/149‑1 (MQ=255)                                              aCGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCgg                                                                                                   <  2:171608/149‑1 (MQ=255)                                                ggCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCC‑CCTGCggg                                                                                                  >  3:246338/1‑148 (MQ=255)                                                ggCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCggg                                                                                                  >  2:79899/1‑148 (MQ=255)                                                   gcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgcCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCAt                                                                                               <  5:11770‑M1/53‑1 (MQ=255)                                                                   ctacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgcCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCtgtg                                                                                  <  6:57636‑M1/66‑1 (MQ=255)                                                                   ctacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgcCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCtgtg                                                                                  >  5:57636‑M1/80‑145 (MQ=255)                                                                     aTTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCg                                                                            >  5:99358/1‑149 (MQ=255)                                                                      ttGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCgg                                                                           <  3:113892/149‑1 (MQ=255)                                                                      cgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgcCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGc                                                                             >  6:11770‑M1/77‑147 (MQ=255)                                                                         ccGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCCCGACCACAGGGGTGGCGCCCCC‑CCAGCGGGGCTTTACGAACCAGTTGGGGCCGGcc                                                                        >  5:1721/1‑148 (MQ=255)                                                                                     aTGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAa‑ga                                                           <  1:220853/149‑1 (MQ=255)                                                                                          ccTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGGCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCg                                                      <  5:77336/149‑1 (MQ=255)                                                                                          ccTGAGTACATCGAGATCATCGATAAAGCCCGGGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCg                                                      <  3:44902/149‑1 (MQ=255)                                                                                              aGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGt                                                    <  4:90771/147‑1 (MQ=255)                                                                                                  cATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGTACAgg                                               <  4:246338/148‑1 (MQ=255)                                                                                                    tCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGTACAGGCTg                                            >  8:227782/1‑149 (MQ=255)                                                                                                     cGAGATCATCGATAACGCCCGTGGCTGAGCTGTAGCCAGGGCCGGCCTCTTCGCGGGCGCGCCCGCGCCCACCGGAGGCGCGCCGCA‑CCTGCGGGCATTACCGTACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGTACAGGCTGa                                           <  7:278069/149‑1 (MQ=38)                                                                                                          tcatcGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCtgt                                                                                   <  6:20629/105‑1 (MQ=255)                                                                                                            atcGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCCCTCCCCCAGGAGTCGCGCCGCA‑CCAGCGGGCATTTCCGAACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGTACAGGCTGATCAAgcg                                    >  6:253567/1‑149 (MQ=255)                                                                                                                     gCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCGGGGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGGACAGGCGGATCAAGCGCCCGGccc                            >  3:210757/1‑146 (MQ=39)                                                                                                                                     tAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCC‑CCTGCGGGCATTACCGCACCGGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGTACAGGCTGCTCAAGCGCCAGGCACAAAAAACGCCCCGAggg           >  5:309149/1‑149 (MQ=255)                                                                                                                                     tAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCAGCCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAgg            >  1:83938/1‑149 (MQ=255)                                                                                                                                        ccAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTgg                                                                                 >  3:121429/1‑77 (MQ=255)                                                                                                                                        ccAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTgg                                                                                 <  4:121429/77‑1 (MQ=255)                                                                                                                                        ccAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGGGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGTACAGGCTGATCAAgc                                     <  5:69498/120‑1 (MQ=255)                                                                                                                                          aGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCTCGGGGCGt       <  1:79899/149‑1 (MQ=255)                                                                                                                                              ccGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCTCGGGGCGtttttt  <  6:99358/149‑2 (MQ=255)                                                                                                                                               cGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGc                   <  7:70162/131‑1 (MQ=255)                                                                                                                                               cGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGc                   >  8:70162/1‑131 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GCTTCTTCGTCGAAGCTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCA‑CCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAA‑GAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTG  >  NC_002947/867775‑868064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.