New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3135652	32 (0.650)	4 (0.090)	4/252	NT	12.0%	coding (305/1335 nt)	PP_2752	hypothetical protein
	?	NC_002947	= 3135680	28 (0.600)					coding (333/1335 nt)	PP_2752	hypothetical protein

CCGGGATGATCGATTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGT  >  NC_002947/3135505‑3135799                                                                                                                                                    |                                                                                                                                                    ccGGGATGATCGATTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCt                                                                                                                                                    >  1:148575/1‑149 (MQ=255)  cGGGATGATCGATTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTc                                                                                                                                                   >  6:197446/1‑149 (MQ=255)      atgatCGATTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGt                                                                                                                                               <  1:286104/149‑1 (MQ=255)            gATTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCgg                                                                                                                                          <  5:98837/148‑1 (MQ=255)            gATTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCgg                                                                                                                                          >  6:98837/1‑148 (MQ=255)             aTTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTc                                                                                                                                        >  4:3310/1‑149 (MQ=255)                     cGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGc                                                                                                                                 <  5:197446/148‑1 (MQ=255)                      gCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCg                                                                                                                                           >  3:46742/1‑137 (MQ=255)                      gCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCg                                                                                                                                           <  4:46742/137‑1 (MQ=255)                      gCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGccc                                                                                                                               <  1:53006/149‑1 (MQ=255)                           aTCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATgg                                                                                                                          >  2:264624/1‑149 (MQ=255)                              aaCGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCaccattgggctggtagaccgccaccggagc                                                                                                                       >  7:204412‑M1/1‑119 (MQ=255)                                       gAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCaccattgggctggtagaccgccaccggagcgccattga                                                                                                               <  8:204412‑M1/148‑39 (MQ=255)                                                        cGTCAAGCTGCTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCGCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACa                                                                                             <  8:233305/149‑1 (MQ=255)                                                         gTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCaccattgggctggtagaccgccaccggagcgccattgagg                                                                                                             <  6:135067‑M1/132‑41 (MQ=255)                                                         gTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCaccattgggctggtagaccgccaccggagcgccattgagg                                                                                                             >  5:135067‑M1/1‑92 (MQ=255)                                                              gCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAaggccg                                                                                       >  4:119939/1‑149 (MQ=255)                                                                       gCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGAcc                                                                              >  3:218614/1‑149 (MQ=255)                                                                       gCAGGAATGTGAGACCGAGTGGACGGACGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCCCAGGCTGCCTATGCCCTGGCGGAGAAGGCCGAGGGCGAcc                                                                              >  5:253134/1‑149 (MQ=255)                                                                        cAGGAATGTGAGACCGAGTGGACGGCCGAGAAGCGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCg                                                                             <  2:258383/149‑1 (MQ=255)                                                                                tgAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGAGGACAAGGCCGACGCCGACCGGATTCCGc                                                                     >  8:231291/1‑149 (MQ=255)                                                                                  agaCCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCt                                                                    >  6:309151/1‑148 (MQ=255)                                                                                   gaCCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGa                                                                  >  2:188315/1‑149 (MQ=255)                                                                                   gaCCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGACTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGa                                                                  <  3:3310/149‑1 (MQ=255)                                                                                     ccGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATc                                                                <  4:218614/149‑1 (MQ=255)                                                                                           ggACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTc                                                          <  1:264624/149‑1 (MQ=255)                                                                                                    agaAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGt                                                 <  5:309151/149‑1 (MQ=255)                                                                                                        gggCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCt                                                                    <  8:227745/126‑1 (MQ=255)                                                                                                        gggCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCt                                                                    >  7:227745/1‑126 (MQ=255)                                                                                                                   gCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCa                                    <  5:35582/147‑1 (MQ=255)                                                                                                                   gCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCa                                    >  6:35582/1‑147 (MQ=255)                                                                                                                          gcgcTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCTACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGcc                           >  8:286249/1‑149 (MQ=255)                                                                                                                            gcTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCcgc                         <  2:148575/149‑1 (MQ=255)                                                                                                                              ttCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCAGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCcgcg                        >  7:87064/1‑148 (MQ=255)                                                                                                                                cAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCt                     >  4:28892/1‑149 (MQ=255)                                                                                                                                   gAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTc                  >  7:283514/1‑149 (MQ=255)                                                                                                                                     actgCCTCAATTGCGAGCCGGTGTCGGTCTACCAGCACAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGACACCGATGGCCGCGTCtttac                 <  6:253134/145‑3 (MQ=255)                                                                                                                                         ccTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccagaccagcttgac                             >  5:135067‑M2/1‑40 (MQ=255)                                                                                                                                         ccTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccagaccagcttgac                             <  6:135067‑M2/132‑93 (MQ=255)                                                                                                                                          cTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACaa           >  5:240806/1‑149 (MQ=255)                                                                                                                                           tCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccagaccagcttgacgccattgatgccgccttc           <  8:204412‑M2/148‑111 (MQ=255)                                                                                                                                                 gcgcTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAgg                                       <  3:220722/114‑1 (MQ=255)                                                                                                                                                   gcTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccagaccagcttgacgccattgatgccgccttcgacttcgtt  >  7:204412‑M2/1‑30 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CCGGGATGATCGATTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGT  >  NC_002947/3135505‑3135799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.