New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3456775 =	38 (0.780)	4 (0.090)	3/252	NT	8.6%	coding (514/771 nt)	hbdH	3‑hydroxybutyrate dehydrogenase
	?	NC_002947	3456819 =	48 (1.020)					coding (470/771 nt)	hbdH	3‑hydroxybutyrate dehydrogenase

AAAGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTGCGCGTGCGCATGCCCGGCAGC  >  NC_002947/3456627‑3456923                                                                                                                                                     |                                                                                                                                                     tcgccctgaacctgtcggccgtattccatggcacgcgcctggcgctgccgggcatgcgcacgcgcaactgggggcgcatcatcaatatcgcttcggtgcatggcctggtcggctcgattggcaaggcagcctacgtggcagccaagcat                                                                                                                                                      <  8:202509‑M1/1‑1 (MQ=255)   aGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACtggtgg                                                                                                                                                    >  3:239130/1‑149 (MQ=255)    ccctgaacctggcggccgtattccatggcacgcgcctggcgctgccgggcatgcgcacgcgcaactgggggcgcatcatcaatatcgcttcggtgcatggcctggtcggctcgattggcaaggcagcctacgtggcagcgaagcaTGGc                                                                                                                                                   >  5:288356‑M1/146‑149 (MQ=255)     cctgaccctgtcggccgtattccatggcacgcgcctggcgctgccgggcatgcgcacgcgcaactgggggcgcatcatcaatatcgcttcggtgcatggcctggtcggctcgattggcaaggcagcctacgtggcagccaagcaTGGCg                                                                                                                                                  >  3:220732‑M1/145‑149 (MQ=255)     cctgaacctgtcggccgtattccatggcacgcgcctggcgctgccgggcatgcgcacgcgcaactgggggcgcatcatcaatatcgcttcggtgcatggcctggtcggctcgattggcaaggcagcctacgtggcagccaagcaTGGCg                                                                                                                                                  <  1:52159‑M1/5‑1 (MQ=255)     cctgaacctgtcggccgtattccatggcacgcgcctggcgctgccgggcatgcgcacgcgcaactgggggcgcatcatcaatatcgcttcggtgcatggcctggtcggctcgattggcaaggcagcctacgtggcagccaagcaTGGCg                                                                                                                                                  >  3:224870‑M1/145‑149 (MQ=255)     cctgaacctgtcggccgtattccatggcacgcgcctggcgctgccgggcatgcgcacgcgcaactgggggcgcatcatcaatatcgcttcggtgcatggcctggtcggctcgattggcaaggcagcctacgtggcagccaagcaTGGCg                                                                                                                                                  <  5:128317‑M1/5‑1 (MQ=255)      cAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCgg                                                                                                                                                 >  3:48056/1‑149 (MQ=255)      cAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCgg                                                                                                                                                 >  4:178162/1‑149 (MQ=255)            cGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCa                                                                                                                                           <  6:201415/149‑1 (MQ=255)                  cTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCg                                                                                                                                      <  4:79535/148‑1 (MQ=255)                                 aTCGTGGTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGc                                                                                                                      <  4:48056/149‑1 (MQ=255)                                  cgcgcctggcgctgccgggcatgcgcacgcgcaactgggggcgcatcatcaatatcgcttcggtgcatggcctggtcggctcgattggcaaggcagcctacgtggcagccaagcaTGGCGTGATC‑‑GGCCGACCACCTTGGTCAGGCCGa                                                                                                                   >  6:54035‑M1/116‑149 (MQ=255)                                         ggcgctgccgggcatgcgcacgcgcaactgggggcgcatcatcaatatcgcttcggtgcatggcctggtcggctcgattggcaaggcagcctacgtggcagccaagcaTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACg                                                                                                              <  2:229444‑M1/41‑1 (MQ=255)                                          cgcTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGc                                                                                                             >  4:284967/1‑149 (MQ=255)                                                 cgggcatgcgcacgcgcaactgggggcgcatcatcaatatcgcttcggtgcatggcctggtcggctcgattggcaaggcagcctacgtggcagccaagcaTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCtt                                                                                                      >  2:289583‑M1/101‑149 (MQ=255)                                                  gggcatgcgcacgcgcaactgggggcgcatcatcaatatcgcttcggtgcatggcctggtcggctcgattggcaaggcagcctacgtggcagccaagcaTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTg                                                                                                     >  1:229444‑M1/100‑149 (MQ=255)                                                  gCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTg                                                                                                     <  3:284967/149‑1 (MQ=255)                                                     gATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCTGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCt                                                                                                  >  7:102278/1‑149 (MQ=255)                                                     gATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCt                                                                                                  <  4:239130/149‑1 (MQ=255)                                                           cACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGc                                                                                                   <  2:215591/142‑1 (MQ=255)                                                           cACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGACAGCACCCAGCCCGGGCATATGGCATTGCAGGTGCCATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTAAGGCCGATCACGCCATGCTTGGCtagaacg                                                                                            >  1:215591/1‑143 (MQ=255)                                                            aCCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGt                                                                                           >  7:202509/1‑149 (MQ=255)                                                             cccTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTa                                                                                          <  3:178162/149‑1 (MQ=255)                                                              ccTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCTGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAg                                                                                         <  8:102278/149‑1 (MQ=255)                                                              ccTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGt                                                                                           <  3:64401/147‑1 (MQ=255)                                                              ccTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGt                                                                                           >  4:64401/1‑147 (MQ=255)                                                                          gATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGcc                                                                              >  2:291446/1‑148 (MQ=255)                                                                            tcgtcgATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAAt                                                                           >  5:303672/1‑149 (MQ=255)                                                                            tcgtcgATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAAt                                                                           <  1:186856/149‑1 (MQ=255)                                                                              gtcgATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGt                                                                                           <  2:33506/131‑1 (MQ=255)                                                                              gtcgATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGt                                                                                           >  1:33506/1‑131 (MQ=255)                                                                              gtcgATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCg                                                                         >  7:95372/1‑149 (MQ=255)                                                                               tcgATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATc                                                                          >  6:128317/1‑147 (MQ=255)                                                                               tcgATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATc                                                                          >  1:240916/1‑147 (MQ=255)                                                                               tcgATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGa                                                                        <  6:303672/149‑1 (MQ=255)                                                                                       cTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGc                                                                      <  1:291446/143‑1 (MQ=255)                                                                                       cTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGAc                                                                  >  7:86396/1‑147 (MQ=255)                                                                                            gCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGcc                                                            <  8:86396/148‑1 (MQ=255)                                                                                                            cACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGatat                                           >  2:39723/1‑149 (MQ=255)                                                                                                               ccAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCAt                                                          >  8:286979/1‑131 (MQ=255)                                                                                                               ccAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCAt                                                          <  7:286979/131‑1 (MQ=255)                                                                                                               ccAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATtga                                        >  3:247746/1‑149 (MQ=255)                                                                                                                       ggCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATgcgc                                <  1:39723/149‑1 (MQ=255)                                                                                                                          atatGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGcccc                             <  2:240916/149‑1 (MQ=255)                                                                                                                                       ggTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTGCGCGTgc                <  8:95372/149‑1 (MQ=255)                                                                                                                                       ggTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTGCGCGTgc                <  4:247746/149‑1 (MQ=255)                                                                                                                                          gACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAg                                                               >  7:50433/1‑99 (MQ=255)                                                                                                                                          gACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAg                                                               <  8:50433/99‑1 (MQ=255)                                                                                                                                                 cTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGCCCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTGCGCGTGCGCATGCCCgg      >  3:15675/1‑149 (MQ=255)                                                                                                                                                     TGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTGCGCGTGCGCATGCCCGGCAgc  <  6:220283‑M1/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AAAGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTGCGCGTGCGCATGCCCGGCAGC  >  NC_002947/3456627‑3456923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.