| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4022743 = | 41 (0.840) | 7 (0.150) | 6/246 | NT | 15.3% | intergenic (‑438/+230) | PP_3547/emrB | NAD(P)‑binding oxidoreductase/multidrug transporter permease |
| ? | NC_002947 | 4022835 = | 39 (0.850) | intergenic (‑530/+138) | PP_3547/emrB | NAD(P)‑binding oxidoreductase/multidrug transporter permease | |||||
GTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAA > NC_002947/4022597‑4022891 | ggcattgagctaaaatcaaggcaagatcccgatgctctcgctctcgctctcgctctcgctctcgctctcgcttcggcttttgattttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcaggg > 7:15655‑M1/147‑149 (MQ=255) ttgagctaaaatcaaggcaagatcccgatgctctcgctctcgctctcgctctcgctctcgctctcgcttcggcttttgattttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcaGGGCTTg > 5:75656‑M1/143‑149 (MQ=255) tATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCt < 6:95099/146‑1 (MQ=255) tATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCt > 5:95099/1‑146 (MQ=255) gagctaaaatcaaggcaagatcccgatgctctcgctctcgctctcgctctcgctctcgctctcgcttcggcttttgattttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcaGGGCTTGc > 8:35565‑M1/141‑148 (MQ=255) attcattcACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCt > 6:59190/1‑149 (MQ=255) cattcaCGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTcc < 7:135478/148‑1 (MQ=255) attcaCGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCg > 7:223053/1‑149 (MQ=255) attcaCGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCg > 4:84663/1‑149 (MQ=255) attcaCGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCg > 1:160957/1‑149 (MQ=255) aCGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGggag < 3:176261/149‑1 (MQ=40) aCGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGggag < 3:217557/149‑1 (MQ=40) aaggcaagatcccgatgctctcgctctcgctctcgctctcgctctcgctctcgcttcggcttttgattttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcaGGGCTTGCTCCCGGGAGGAc < 5:187883‑M1/20‑1 (MQ=255) gcgcATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCt < 2:11525/149‑1 (MQ=255) aGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGc > 4:156629/1‑149 (MQ=255) tCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGccc > 6:262499/1‑149 (MQ=255) cccTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑At < 3:84663/149‑1 (MQ=255) tctcgctctcgctctcgctctcgctctcgctctcgcttcggcttttgattttgcttctaagcgcgcgatagcccaggcgcggcggattgcgacttcaggaggccgagcgcaGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATc < 8:3283‑M1/38‑1 (MQ=255) cGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTgg < 5:225598/148‑1 (MQ=255) gTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGATACCGGGAGGACCGCGCT‑GCAGGCCCC‑AACCTGGGGCCCAGCGCATGAc > 4:21829/1‑149 (MQ=255) tCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGCCCGCGCG‑GCAGCCCCC‑GTCCAGGGGCCCCGCGAGTGACg > 4:200909/1‑149 (MQ=14) aCTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAg < 2:6759/138‑1 (MQ=255) aCTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTACGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAg > 1:6759/1‑138 (MQ=255) tCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCATTAGCCCGCCCCAAAACGGGCGCCCAGCGCTTCACGGGCacc > 1:257054/1‑145 (MQ=14) cAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCGCCGGGGGTGGGCCCGGGGGGGCCGCGCG‑GCGGGCCCC‑CACCTGGGGGCCCGCGCTTGTCGGGCATCCCTGc > 2:245036/1‑149 (MQ=17) aaCGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGccc < 4:276350/149‑1 (MQ=255) cgACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑AGGATGGGGcctgca < 6:222233/124‑5 (MQ=14) cgACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑AGGATGGGGcctgca > 5:222233/1‑120 (MQ=14) ttgctttggcttttgcttctaagcgcgcggtagttcaggcgatgcagattgcgacttcaggaggccgagcgcaGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTc > 7:117613‑M1/74‑147 (MQ=255) aaaaaGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑AGGATGGGGcctgca > 3:384/1‑116 (MQ=14) aaaaaGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑AGGATGGGGcctgca < 4:384/120‑5 (MQ=14) aGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCtt < 3:156629/149‑1 (MQ=255) gTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTc < 5:262499/149‑1 (MQ=255) gTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTc < 8:223053/149‑1 (MQ=255) attttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcaGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTc > 6:187883‑M1/65‑148 (MQ=255) cAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAg < 5:59190/149‑1 (MQ=255) aaaaaCGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGc < 6:276756/148‑1 (MQ=255) aaaaaCGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGc > 5:276756/1‑148 (MQ=255) aaaCGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCt < 2:160957/149‑1 (MQ=255) ctaagcgcgcgatagcccaggcgcggcggattgcgacttcaggaggccgagcgcaGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCt > 7:3283‑M1/56‑148 (MQ=255) tcatcCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGt > 5:98016/1‑114 (MQ=32) tcatcCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGt < 6:98016/114‑1 (MQ=32) atcCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGCCCCCGCT‑GCAGGCCCC‑CACCTGGGGGCCAGAGCTTGACGGGCATACATGCCCCTCACCACCCGTCGCAAGCCCAGCGCGCGGccgacgga > 6:244812/1‑142 (MQ=11) gCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTTCTCCCGGGAGGACCGCCCA‑GCAGGCCCC‑CACCAGGGGCCCAGCGCATGACGGGCCTCCAAGCCCGGCACCACCCATCCCAACCCCGGCGCGAGGCCTCCAGAACTCg > 2:237386/1‑148 (MQ=2) ccccTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGcctcct < 6:290042/140‑1 (MQ=34) ccccTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGcctcct > 5:290042/1‑140 (MQ=34) tCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTg > 1:199490/1‑149 (MQ=39) ttcaggaggccgagcgcaGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGt < 6:73816‑M1/73‑1 (MQ=255) ttcaggaggccgagcgcaGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGt > 5:73816‑M1/19‑91 (MQ=255) cGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTggg < 3:21829/149‑1 (MQ=40) ccTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATcgc < 2:257054/148‑1 (MQ=255) cTCGCTCCGGGCTTGCTCCCGGGAGGACGGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATcgcgc > 1:173057/1‑149 (MQ=255) cTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATcgcgc > 2:199253/1‑149 (MQ=255) cTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCt > 6:67989/1‑148 (MQ=255) GGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGaa > 2:173057‑M1/1‑149 (MQ=255) | GTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCT‑GCAGGCCCC‑ATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAA > NC_002947/4022597‑4022891 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |