New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4539726 =46 (0.940)8 (0.170) 6/252 NT 15.2% coding (559/831 nt) nudC NADH pyrophosphatase
?NC_002947 4539780 = 45 (0.960)coding (505/831 nt) nudC NADH pyrophosphatase

TCCTCGATCTCGTCCGGTTGCATGACAATCTCGCCACCGGCGTACTCGGCATGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAG  >  NC_002947/4539578‑4539874
                                                                                                                                                    |                                                                                                                                                       
acgcaaattcgctgggagcgggcgatgtattgccaaccctgcgacctgcgcagctatccgcgaatttcacccagcatgatcgtgctggtgacccgcggcgatgaaatcctgctggcgcgttcgccgcgcttcgtcaccggggtgtacag                                                                                                                                                         <  3:102217‑M1/1‑1 (MQ=255)
     gATCTCGTCCGGTTGCATGACAATCTCGCCACCGGCGTACTCGGCATGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCttcgcgcacttcgcgcac                                                                                                                                                      <  6:262758/147‑1 (MQ=255)
           gTCCGGTTGCATGACAATCTCGCCACCGGCGTACTCGGCATGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCa                                                                                                                                               <  1:5691/147‑1 (MQ=255)
                          gtattgccaaccctgcgacctgcgcagctatccgcgaatttcacccagcatgatcgtgctggtgacccgcggcgatgaaatcctgctggcgcgttcgccgcgcttcgtcaccggggtgtacaGCACCTTGGCA‑‑GTCTTCGGCCGATTCa                                                                                                                             <  8:144308‑M1/27‑1 (MQ=255)
                            tctcGCCACCGGCGTACTCGGCATGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCAccc                                                                                                                          >  7:222813/1‑149 (MQ=255)
                              tgccaaccctgcgacctgcgcagctatccgcgaatttcacccagcatgatcgtgctggtgacccgcggcgatgaaatcctgctggcgcgttcgccgcgcttcgtcaccggggtgtacaGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCgg                                                                                                                        <  5:8404‑M1/31‑1 (MQ=255)
                                  cACCGGCGTACTCGGCATGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCg                                                                                                                    <  1:36279/149‑1 (MQ=255)
                                    ccctgcgacctgcgcagctatccgcgaatttcacccagcatgatcgtgctggtgacccgcggcgatgaaatcctgctggcgcgttcgccgcgcttcgtcaccggggtgtacaGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCgg                                                                                                                   <  3:83338‑M1/36‑1 (MQ=255)
                                     cGGCGTACTCGGCATGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCAATGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGc                                                                                                                  >  1:80516/1‑148 (MQ=255)
                                             tCGGCATGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAgg                                                                                                                                                 <  6:237478/111‑1 (MQ=255)
                                             tCGGCATGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAgg                                                                                                                                                 >  5:237478/1‑111 (MQ=255)
                                               ggCATGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGcc                                                                                                        >  6:120206/1‑148 (MQ=255)
                                               ggCATGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGcc                                                                                                        >  6:40541/1‑148 (MQ=255)
                                               ggCATGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGcc                                                                                                        >  2:215742/1‑148 (MQ=255)
                                                  aTGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAgg                                                                                                    <  5:98068/149‑1 (MQ=255)
                                                   tGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGt                                                                                                   >  5:167658/1‑149 (MQ=255)
                                                    gctatccgcgaatttcacgcagcatgatcgtgctggtgacccgcggcgatgaaatcctgctggcgcgttcgccgcgcttcgtcaccggggtgtacaGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTg                                                                                                  >  3:230305‑M1/97‑149 (MQ=255)
                                                    gctatccgcgaatttcacccagcatgatcgtgctggtgacccgcggcgatgaaatcctgctggcgcgttcgccgcgcttcgtcaccggggtgtacaGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTg                                                                                                  >  4:83338‑M1/97‑149 (MQ=255)
                                                       aaCCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCt                                                                                                <  8:222813/148‑1 (MQ=255)
                                                       aaCCCAGAATCATAGAATGCGGAAACGGCCAGAACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCt                                                                                                <  8:211715/148‑1 (MQ=255)
                                                        tccgcgaatttcacccagcatgatcgtgctggtgacccgcggcgatgaaatcctgctggcgcgttcgccgcgcttcgtcaccggggtgtacaGCACCTTGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCt                                                                                                >  7:144308‑M1/93‑148 (MQ=255)
                                                        tccgcgaatttcacccagcatgatcgtgctggtgacccgcggcgatgaaatcctgctggcgcgttcgccgcgcttcgtcaccggggtgtacaGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTg                                                                                               >  3:146906‑M1/93‑148 (MQ=255)
                                                        tccgcgaatttcacccagcatgatcgtgctggtgacccgcggcgatgaaatcctgctggcgcgttcgccgcgcttcgtcaccggggtgtacaGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTg                                                                                               >  6:8404‑M1/93‑148 (MQ=255)
                                                        aCCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGt                                                                                              <  2:80516/149‑1 (MQ=255)
                                                              catcatCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACAccc                                                                                        <  5:120206/149‑1 (MQ=255)
                                                                tcatcGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCa                                                                                                                             <  2:116260/110‑1 (MQ=255)
                                                                tcatcGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCa                                                                                                                             >  1:116260/1‑110 (MQ=255)
                                                                tcatcGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCg                                                                                      <  4:23682/149‑1 (MQ=255)
                                                                 catcGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTACACCGCCACTTATTCGCGCACTTCCAGGTCCAGGCAAGGGATACGCCCAATTCACCCGGTACGGAAAAACCTGCCAAGGTGATGTAAAcccc                                                                                       >  1:99456/1‑149 (MQ=255)
                                                                  atcGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGt                                                                                    <  1:293683/149‑1 (MQ=255)
                                                                    cGAATGCGGAAACGACCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGa                                                                                  >  4:277258/1‑149 (MQ=255)
                                                                            gAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAgcgc                                                                          >  2:118381/1‑149 (MQ=255)
                                                                                cGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACACGGTTAGGCAAAACCTGCCAAGGTGCTGTACACACCGGTGACGAAGCgcggc                                                                       >  6:80830/1‑148 (MQ=255)
                                                                                                  gACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGAttt                                                    >  7:58884/1‑149 (MQ=255)
                                                                                                    cGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCa                                                  <  1:215742/149‑1 (MQ=255)
                                                                                                      tACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGAACTTCGCTCACCAGGCA‑‑GTCTTAGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGAAGAAGCGCGGCGAACGCGCCAGCAGGATTTCATc                                                <  5:80830/149‑1 (MQ=255)
                                                                                                           aaTGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCgg                                                                                     >  1:109977/1‑107 (MQ=255)
                                                                                                           aaTGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCgg                                                                                     <  2:109977/107‑1 (MQ=255)
                                                                                                             tGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCgg                                         <  1:118381/149‑1 (MQ=255)
                                                                                                               ttcttcACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCggg                                        <  5:40541/148‑1 (MQ=255)
                                                                                                               ttcttcACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGt                                       >  7:14019/1‑149 (MQ=255)
                                                                                                                    cACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCAc                                    >  5:304075/1‑147 (MQ=255)
                                                                                                                      ccTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAg                                 >  5:115485/1‑148 (MQ=255)
                                                                                                                      ccTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAg                                 >  4:289039/1‑148 (MQ=255)
                                                                                                                       cTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCa                               >  4:53616/1‑149 (MQ=255)
                                                                                                                         ccACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGcc                                                              >  2:55814/1‑116 (MQ=255)
                                                                                                                         ccACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGcc                                                              <  1:55814/116‑1 (MQ=255)
                                                                                                                          cACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCAc                              <  2:99456/147‑1 (MQ=255)
                                                                                                                            ccGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGAt                           >  8:173193/1‑148 (MQ=255)
                                                                                                                               ccACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATg                       >  4:266365/1‑149 (MQ=255)
                                                                                                                                     cttcgcgcacttcgcgcaCCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGt                 >  3:146444/1‑149 (MQ=255)
                                                                                                                                      ttcgcgcacttcgcgcacCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTggggg                >  1:109475/1‑147 (MQ=255)
                                                                                                                                        cgcgcacttcgcgcacCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCATGATCGTGCTggtga                <  6:304075/147‑4 (MQ=255)
                                                                                                                                              cttcgcgcacCAGGCA‑‑GTCTTCGTCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTcgc        <  3:266365/149‑1 (MQ=255)
                                                                                                                                              cttcgcgcacCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTcgc        <  8:14019/149‑1 (MQ=255)
                                                                                                                                              cttcgcgcacCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTcgc        <  2:109475/149‑1 (MQ=255)
                                                                                                                                                 cgcgcacCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTcgcg       <  8:58884/147‑1 (MQ=255)
                                                                                                                                                    GCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAg  <  8:23723‑M1/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                       
TCCTCGATCTCGTCCGGTTGCATGACAATCTCGCCACCGGCGTACTCGGCATGGAAACCGAGCATCATCGAATGCGGAAACGGCCAGCACTGGCTGCCGACGTACTGAATGTTCTTCACCTCCACCGCCACTTCTTCGCGCACTTCGCGCACCAGGCA‑‑GTCTTCGGCCGATTCACCCGGTTCGGCAAAACCTGCCAAGGTGCTGTACACCCCGGTGACGAAGCGCGGCGAACGCGCCAGCAGGATTTCATCGCCGCGGGTCACCAGCACGATCATGCTGGGTGAAATTCGCGGATAG  >  NC_002947/4539578‑4539874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.