New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5730207 =	47 (0.960)	4 (0.090)	4/246	NT	7.8%	coding (271/1083 nt)	pip	proline iminopeptidase
	?	NC_002947	5730283 =	50 (1.090)					coding (195/1083 nt)	pip	proline iminopeptidase

GTCTATGCCAAGGTGTTCGCGAATGCGCTCCAGGTCTTCGACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGCCAGATCGTGCCTGGCGTAGGGTTTGATCTG  >  NC_002947/5730061‑5730348                                                                                                                                                   |                                                                                                                                              ctgaaagcgcaattcaggtttatgatggcccacggccgaataatcctcacacggagtgcgcaatgcagaccctctacccgcagatcaaaccctacgccaggcacgatctggccgtggaagcgccgcatgtgctttatgtcgacgaaAGc                                                                                                                                             >  4:205203‑M1/147‑149 (MQ=255)   gaaagcgcaattcaggtttatgatggcccacggccgaataatcctcacacggagtgcgcaatgcagaccctctacccgcagatcaaaccctacgccaggcacgatctggccgtggaagcgccgcatgtgctttatgtcgacgaaAGCgg                                                                                                                                           <  2:5365‑M1/5‑1 (MQ=255)        ccAAGGTGTTCGCGAATGCGCTCCAGGTCTTCGACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTg                                                                                                                                      <  4:140955/149‑1 (MQ=255)         cAAGGTGTTCGCGAATGCGCTCCAGGTCTTCGACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTgg                                                                                                                                     >  6:79889/1‑149 (MQ=255)         cAAGGTGTTCGCGAATGCGCTCCAGGTCTTCGACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTgg                                                                                                                                     <  3:206889/149‑1 (MQ=255)          aagtagctCGCGAATGCGAGTCAGGTCGTCGCCCAGGTGCCCGGTGGTGTTGTTCTCCAGGCTCGCATGTGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTggg                                                                                                                                    <  8:265829/142‑1 (MQ=255)                 tCGCGAATGCGCTCCAGGTCTTCGACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCgt                                                                                                                              >  2:186132/1‑147 (MQ=255)                    cgAATGCGCTCCAGGTCTTCGACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGcagc                                                                                                                           >  4:128768/1‑148 (MQ=255)                            cTCCAGGTCTTCGACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGGCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCgg                                                                                                                  <  1:233329/149‑1 (MQ=255)                               cAGGTCTTCGACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGc                                                                                                               <  2:178989/149‑1 (MQ=255)                               cAGGTCTTCGACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGc                                                                                                               <  4:240657/149‑1 (MQ=255)                                  gTCTTCGACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTc                                                                                                            >  1:235771/1‑149 (MQ=255)                                    cTTCGACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCg                                                                                                          >  3:60790/1‑149 (MQ=255)                                      gaataatcctcacacggagtgcgcaatgcagaccctctacccgcagatcaaaccctacgccaggcacgatctggccgtggaagcgccgcatgtgctttatgtcgacgaaAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTg                                                                                                        <  2:183680‑M1/40‑1 (MQ=255)                                        gACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGTTCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGa                                                                                                      >  3:114095/1‑149 (MQ=255)                                         aCCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGAt                                                                                                     <  3:128768/149‑1 (MQ=255)                                            aggtgccaggtgGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGaa                                                                                                  <  8:269488/149‑1 (MQ=255)                                             ggtgccaggtgGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAac                                                                                                 <  2:235771/149‑1 (MQ=255)                                                  cacggagtgcgcaatgcagaccctctacccgcagatcaaaccctacgccaggcacgatctggccgtggaagcgccgcatgtgctttatgtcgacgaaAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAAcaccac                                                                                            <  5:79754‑M1/52‑1 (MQ=255)                                                     gtggtgTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACggg                                                                                         >  4:277061/1‑149 (MQ=255)                                                       ggtgTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAac                                                                                                 <  2:286184/139‑1 (MQ=255)                                                       ggtgTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAac                                                                                                 >  1:286184/1‑139 (MQ=255)                                                              ttCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTc                                                                                >  1:143731/1‑149 (MQ=255)                                                                   cAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGc                                                                            >  5:93236/1‑148 (MQ=255)                                                                      gCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCATCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGc                                                                        <  4:168687/149‑1 (MQ=255)                                                                      gCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGc                                                                        >  5:244179/1‑149 (MQ=255)                                                                       cTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGcc                                                                       <  4:60790/149‑1 (MQ=255)                                                                          gCATGGGGCGTGGAGCGGCCACAGCCGCGCGGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCt                                                                    <  4:247772/149‑1 (MQ=255)                                                                           cATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCtt                                                                   <  5:79889/149‑1 (MQ=255)                                                                           cATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCtt                                                                   <  3:277061/149‑1 (MQ=255)                                                                             cccgcagatcaaaccctacgccaggcacgatctggccgtggaagcgccgcatgtgctttatgtcgacgaaAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCttt                                                                  >  6:79754‑M1/71‑148 (MQ=255)                                                                             cccgcagatcaaaccctacgccaggcacgatctggccgtggaagcgccgcatgtgctttatgtcgacgaaAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCtt                                                                   >  1:183680‑M1/71‑147 (MQ=255)                                                                                ggCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTtcgtc                                                              <  1:77318/149‑1 (MQ=255)                                                                                            ccACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGca                                                   >  1:59849/1‑148 (MQ=255)                                                                                              acaGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACAt                                                <  6:244179/149‑1 (MQ=255)                                                                                                aGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATTAACACCACGGGCAGACCTTCCGGCGAGCCGCTTtcgtc                                                              <  4:65058/133‑1 (MQ=255)                                                                                                aGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTtcgtc                                                              >  3:65058/1‑133 (MQ=255)                                                                                                   cgcgCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCCCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTtcgtc                                                              >  4:252706/1‑130 (MQ=255)                                                                                                   cgcgCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCCCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTtcgtc                                                              <  3:252706/130‑1 (MQ=255)                                                                                                     cgcTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGgcgc                                         <  2:143731/149‑1 (MQ=255)                                                                                                          gTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGa                                                                                     <  5:11109/100‑1 (MQ=255)                                                                                                          gTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGa                                                                                     >  6:11109/1‑100 (MQ=255)                                                                                                              aaGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGc                                <  4:114095/149‑1 (MQ=255)                                                                                                              aaGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGc                                >  3:290915/1‑149 (MQ=255)                                                                                                                ggTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGCCa                              <  4:290915/149‑1 (MQ=255)                                                                                                                      gatgCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGCCAGATCGt                        >  8:209266/1‑149 (MQ=255)                                                                                                                                 ggTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGCCAGATCGTGCCTGGCGTAg             <  6:93236/149‑1 (MQ=255)                                                                                                                                     gggATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGCCAGATCGTGCCTGGCGTAGGGt          <  2:59849/148‑1 (MQ=255)                                                                                                                                      ggATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGc                                <  6:109506/125‑1 (MQ=255)                                                                                                                                      ggATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGc                                >  5:109506/1‑125 (MQ=255)                                                                                                                                       gATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGCCAGATCGTGCCTGGCGTAGGGttt        >  5:69634/1‑148 (MQ=255)                                                                                                                                       gATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGCCAGATCGTGCCTGGCGTAGGGttt        >  2:190543/1‑148 (MQ=255)                                                                                                                                            aaGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGCCAGATCGTGCCTGGCGTAGGGTTTGATCTg  >  7:84909/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                              GTCTATGCCAAGGTGTTCGCGAATGCGCTCCAGGTCTTCGACCAGGTGCCAGGTGGTGTTGTTCTCCAGGCTCGCATGGGGCGTGGAGCGGCCACAGCCGCGCTGGTCGAAGGTGATGATGCGGTACAGGTTGGGATCAAAGTAGCAGCGGCTCTGGGCGTCGCAGCCAGCACCGGGGCCTCCGTGGATGAACACCACGGGCAGACCTTCCGGCGAGCCGCTTTCGTCGACATAAAGCACATGCGGCGCTTCCACGGCCAGATCGTGCCTGGCGTAGGGTTTGATCTG  >  NC_002947/5730061‑5730348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.