New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5754738 | 47 (0.960) | 4 (0.080) | 4/254 | NT | 8.0% | coding (934/1086 nt) | glnL | two‑component system sensor histidine kinase/phosphatase GlnL/GlnG |
? | NC_002947 | = 5754774 | 47 (0.990) | coding (970/1086 nt) | glnL | two‑component system sensor histidine kinase/phosphatase GlnL/GlnG |
CGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCC > NC_002947/5754591‑5754884 | cgcCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGt < 7:27066/149‑1 (MQ=255) ccTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCa < 6:283292/149‑1 (MQ=255) aTCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGccc > 3:236684/1‑149 (MQ=255) aCCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGa < 4:37147/149‑1 (MQ=255) gCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCggg > 6:90739/1‑149 (MQ=255) cgcCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTgg < 1:135569/149‑1 (MQ=255) cTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑Ct < 5:167835/149‑1 (MQ=255) tGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGccaggcccagcccggtaccgtccgggcggccact > 4:211556‑M1/1‑114 (MQ=255) gcgcCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGccaggcccagcccggtaccgtccgggcggccactga > 3:111815‑M1/1‑113 (MQ=255) gcCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGcc > 2:61987‑M2/1‑147 (MQ=255) ccAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTACCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGcca > 2:177648‑M2/1‑146 (MQ=255) aGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGccaggcccagcccggtaccgtccgggcggccactgaccatg < 4:111815‑M1/149‑42 (MQ=255) gTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGccaggcccagcccggtaccgtccgggcggccactgaccatgg < 3:211556‑M1/149‑43 (MQ=255) cACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTAcc < 5:90739/148‑1 (MQ=255) aCCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTAccc < 7:288273/148‑1 (MQ=255) gCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAAcatc < 5:161943/149‑1 (MQ=255) ccACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAAcatca > 3:97491/1‑149 (MQ=255) cACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTAcc < 2:16352/138‑1 (MQ=255) cACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTAcc > 1:16352/1‑138 (MQ=255) gggTCACCGGCTGGTAGCGCGGGTTGAGATCATCGACAACGGCCGAGGCATGCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAAcatca < 4:274857/141‑1 (MQ=255) gCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAAcatca > 3:274857/1‑143 (MQ=255) cGTCACCGCCTGGTAGCGAGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATcagcc < 5:98673/148‑1 (MQ=255) tCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATcagccag > 8:3015/1‑148 (MQ=255) gCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAg < 7:3015/149‑1 (MQ=255) gTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGcc < 1:295618/148‑1 (MQ=255) gggctggTAGAGATCATCGACAAGGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGAt < 3:161447/144‑1 (MQ=255) gcgcGGGTAGCGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCATGGGCCGCCCCGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGAt < 7:184413/149‑1 (MQ=255) gcgcGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGAt > 2:88078/1‑149 (MQ=255) ggTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAgt < 1:277769/149‑1 (MQ=255) tAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAgtgt < 4:97491/149‑1 (MQ=255) agaTCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGa > 7:256685/1‑148 (MQ=255) gaTCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGaaa < 5:114817/149‑1 (MQ=255) atcatcGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGAt > 4:290415/1‑137 (MQ=255) atcatcGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGAt < 3:290415/137‑1 (MQ=255) atcatcGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAg > 4:260017/1‑149 (MQ=255) atcGACAACGGCCCAGGCATCCCGCCGGAACTTCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGcc < 6:277596/148‑1 (MQ=255) atcGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGCACTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGcc < 1:88078/149‑1 (MQ=255) gACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGc > 1:301994/1‑149 (MQ=255) aCAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCt < 3:136958/149‑1 (MQ=255) aaCGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTgg > 3:180813/1‑149 (MQ=255) aaCGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTgg > 6:80933/1‑149 (MQ=255) cAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATAcc > 7:64940/1‑149 (MQ=255) ggCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGc < 3:260017/149‑1 (MQ=255) cgccgGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTtctc > 7:5596/1‑148 (MQ=255) cgGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGAtt < 2:301994/149‑1 (MQ=255) tGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTg > 3:192387/1‑149 (MQ=255) tGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTg > 6:265208/1‑149 (MQ=255) gAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCctct > 6:203803/1‑149 (MQ=255) ctATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAg < 4:236684/146‑1 (MQ=255) ctATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGa < 8:256685/148‑1 (MQ=255) ctATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGa < 8:64940/148‑1 (MQ=255) ctATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAg > 7:62867/1‑149 (MQ=255) aTCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTAGATTTAACTGCCTCTGGAACAAGGAGcc > 8:259886/1‑149 (MQ=255) tCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCa > 3:8467/1‑149 (MQ=255) ccATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGccatgggatagaagagggtttcctgcagttccggcgggatgcctgggccgttgtcgatgatctctacccgcgctaccaggcggtgacgcacgtggccgatggtgaac < 3:211556‑M2/149‑108 (MQ=255) ccATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCAcc > 7:155959/1‑149 (MQ=255) cATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGccatgggatagaagagggtttcctgcagttccggcgggatgcctgggccgttgtcgatgatctctacccgcgctaccaggcggtgacgcacgtggccgatggtgaact < 4:111815‑M2/149‑109 (MQ=255) tGGccaggcccagcccggtaccgtccgggcggccactgaccatggggtagaagagggtttcctgcagttccggcgggatgcctgggccgttgtcgatgatctctacccgcgctaccaggcggtgacgcacgtggccgatggtgaactgg > 2:177648‑M1/1‑3 (MQ=255) ggccaggcccagcccggtaccgtccgggcggccactgaccatgggatagaagagggtttcctgcagttccggcgggatgcctgggccgttgtcgatgatctctacccgcgctaccaggcggtgacgcacgtggccgatggtgaactggc > 2:61987‑M1/1‑2 (MQ=255) | CGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTACCGGGCTGGGC‑CTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCC > NC_002947/5754591‑5754884 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |