New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6121080 =	48 (0.980)	4 (0.090)	4/250	NT	7.4%	coding (1070/1386 nt)	PP_5371	rubredoxin/rubredoxin reductase
	?	NC_002947	6121167 =	54 (1.160)					coding (983/1386 nt)	PP_5371	rubredoxin/rubredoxin reductase

CGGGAGGTGTCAGCAGGCACAGAGGGACGACCGGGGTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTCAAGGTTGGGGCGCAAGCCCACTGCA  >  NC_002947/6120934‑6121220                                                                                                                                                   |                                                                                                                                             cGGGAGGTGTCAGCAGGCACAGAGGGACGACCGGGGTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTgg                                                                                                                                            >  2:97246/1‑149 (MQ=255)   cacgaccttgcagtgcatcgagccggacggcgaaggctaccgactgacccttgccgacggtcaggtcgtcggtgcagacctggtgctcagtgcagtgggcttgcgccccaaccttgagctggcgctggaagccggcctggactgTGGcc                                                                                                                                          <  3:184017‑M1/5‑1 (MQ=255)     aGGTGTCAGCAGGCACAGAGGGACGACCGGGGTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGt                                                                                                                                        <  3:106287/149‑1 (MQ=255)        tgtCAGCAGGCACAGAGGGACGACCGGGGTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGa                                                                                                                                     >  8:55839/1‑149 (MQ=255)         gtCAGCAGGCACAGAGGGACGACCGGGGTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGa                                                                                                                                     >  8:87123/1‑148 (MQ=255)            agcagGCACAGAGGGACGACCGGGGTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGAtctc                                                                                                                                 <  5:198563/149‑1 (MQ=255)             gcagGCACAGAGGGACGACCGGGGTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGAtctc                                                                                                                                 >  2:59406/1‑148 (MQ=255)                             gacCGGGGTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAgg                                                                                                                >  6:210350/1‑149 (MQ=255)                                cGGGGTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCa                                                                                                              >  3:269205/1‑148 (MQ=255)                                cGGGGTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCAt                                                                                                             <  5:210350/149‑1 (MQ=255)                                 ggggTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGCAGCAATCGACCAAggaa                                                                                                              >  6:213766/1‑145 (MQ=255)                                  gggTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCa                                                                                                              >  5:309156/1‑146 (MQ=255)                                  gggTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCa                                                                                                              >  6:33629/1‑146 (MQ=255)                                  gggTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAg                                                                                                           <  6:224511/149‑1 (MQ=255)                                          aCCGTCACGTGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCg                                                                                                    <  5:33629/148‑1 (MQ=255)                                          aCCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGa                                                                                                                               <  7:26281/121‑1 (MQ=255)                                          aCCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGa                                                                                                                               >  8:26281/1‑121 (MQ=255)                                          aCCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCg                                                                                                    <  7:87123/148‑1 (MQ=255)                                            cGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGtt                                                                                                 <  1:59406/149‑1 (MQ=255)                                                aCGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGa                                                                                             <  3:223498/149‑1 (MQ=255)                                                   ggCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGt                                                                                          <  8:78308/149‑1 (MQ=255)                                                        cAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTa                                                                                     <  7:55839/149‑1 (MQ=255)                                                           tGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGtt                                                                                  >  8:55122/1‑149 (MQ=255)                                                               tAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGc                                                                              >  4:247550/1‑149 (MQ=255)                                                                   gtcgtcggtgcagacctggtgctcagtgcagtgggcttgcgccccaaccttgagctggcgctggaagccggcctggactgTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTc                                                                           <  2:175430‑M1/68‑1 (MQ=255)                                                                     gcggcgGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGAc                                                                        >  8:10419/1‑149 (MQ=255)                                                                        gcggTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCtt                                                                     <  4:269205/149‑1 (MQ=255)                                                                        gcggTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCtt                                                                     >  2:163439/1‑149 (MQ=255)                                                                               gtTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTtgt                                                                                >  5:90854/1‑131 (MQ=255)                                                                               gtTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTtgt                                                                                <  6:90854/131‑1 (MQ=255)                                                                                   gCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCgg                                                           <  7:55122/148‑1 (MQ=255)                                                                                    cccAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGa                                                                   <  3:297148/139‑1 (MQ=255)                                                                                    cccAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGa                                                                   >  4:297148/1‑139 (MQ=255)                                                                                    cccAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGc                                                          >  7:13288/1‑148 (MQ=255)                                                                                        ctcagtgcagtgggcttgcgccccaaccttgagctggcgctggaagccggcctggactgTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTAGTGCGTCGACCTTGATCCCGCGGCcaca                                                      >  1:175430‑M1/60‑148 (MQ=255)                                                                                                ttGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGcc                                             >  3:26725/1‑149 (MQ=255)                                                                                                ttGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGcc                                             >  3:220217/1‑149 (MQ=255)                                                                                                  ggCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGcc                                             <  6:309156/147‑1 (MQ=255)                                                                                                  ggCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCgg                                           >  8:77370/1‑149 (MQ=255)                                                                                                   gCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGc                                          <  4:26725/149‑1 (MQ=255)                                                                                                   gCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGc                                          <  1:186821/149‑1 (MQ=255)                                                                                                        ggCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTc                                       >  1:137473/1‑147 (MQ=255)                                                                                                          cACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAATGCATAGATGGCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAgc                                   <  5:213766/149‑1 (MQ=255)                                                                                                               caaccttgagctggcgctggaagccggcctggactgTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAg                                                     >  3:159537‑M1/37‑126 (MQ=255)                                                                                                               caaccttgagctggcgctggaagccggcctggactgTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAg                                                     <  4:159537‑M1/90‑1 (MQ=255)                                                                                                                   cTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTc                           >  5:16096/1‑148 (MQ=255)                                                                                                                      cGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTCaa                         <  8:13288/147‑1 (MQ=255)                                                                                                                        ttGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTCAAGGtt                     <  2:137473/149‑1 (MQ=255)                                                                                                                          gATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTCAAGGTTgg                   >  8:26343/1‑149 (MQ=255)                                                                                                                           aTCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTCAAGGTTgg                   <  7:77370/148‑1 (MQ=255)                                                                                                                           aTCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGAGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTCAAGGTTggg                  <  1:97246/149‑1 (MQ=255)                                                                                                                            tCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTCAAGGTTgggg                 >  2:79478/1‑149 (MQ=255)                                                                                                                               gcgcGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTCAAGGTTGGGgcg               >  3:177708/1‑148 (MQ=255)                                                                                                                                           gcagcaACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTCAAGGTTGGGGCGCAAGCCcactgca  >  3:185341/1‑149 (MQ=255)                                                                                                                                                  cTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTCAAGGTTggg                  <  6:300025/126‑1 (MQ=255)                                                                                                                                                  cTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTCAAGGTTggg                  >  5:300025/1‑126 (MQ=255)                                                                                                                                                   |                                                                                                                                             CGGGAGGTGTCAGCAGGCACAGAGGGACGACCGGGGTTTTCACCGTCACGGGCGCCAATGGGTAGTGGGCGGCGGTCGGTTGGCCCAGCAAGGTCTTGGCGAGGGCACGAATGCCTTCGTTGATCGGCGCGAGGTAAGGCAGCAACTGGCCGTTGATCTCGACGCAATCGCCCAAGGCATAGATGCCCGGTTGTGAGGTCTGTAGTTGTGCGTCGACCTTGATCCCGCGGCCACAGTCCAGGCCGGCTTCCAGCGCCAGCTCAAGGTTGGGGCGCAAGCCCACTGCA  >  NC_002947/6120934‑6121220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.