New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 306878	49 (1.000)	3 (0.060)	3/254	NT	6.8%	coding (793/900 nt)	hslO	molecular chaperone HslO
	?	NC_002947	= 306906	35 (0.740)					coding (821/900 nt)	hslO	molecular chaperone HslO

CGATATCCAGCCACTGCGCTTCAATTGCAGCTGTTCGCGGGAACGCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTCGTCACTGAAACGTTAAATCACAGGATAATCTCCTGTCGAATTGCGCAAAAGCGCAGTTCTGACAG  >  NC_002947/306760‑307042                                                                                                                                                   |                                                                                                                                         cGATATCCAGCCACTGCGCTTCAATTGCAGCTGTTCGCGGGAACGCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGc                                                                                                                                         >  7:42449‑M2/1‑147 (MQ=255)  gATATCCAGCCACTGCGCTTCAATTGCAGCTGTTCGCGGGAACGCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGcta                                                                                                                                       >  6:261136‑M2/1‑146 (MQ=255)       ccAGCCACTGCGCTTCAATTGCAGCTGTTCGCGGGAACGCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGAACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGAATGCCAGTTCTGCAACGAGCGCTActtct                                                                                                                                  >  6:152372/1‑149 (MQ=255)        cAGCCACTGCGCTTCAATTGCAGCTGTTCGCGGGAACGCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTActtctt                                                                                                                                 >  1:100981/1‑149 (MQ=255)        cAGCCACTGCGCTTCAATTGCAGCTGTTCGCGGGAACGCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGACTGCCAGTTCTGCAACGAGCGCTActtctt                                                                                                                                 <  5:152372/149‑1 (MQ=255)               tGCGCTTCAATTGCAGCTGTTCGCGGGAACGCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGcc                                                                                                                          >  1:251147/1‑149 (MQ=255)               tGCGCTTCAATTGCAGCTGTTCGCGGGAACGCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGc                                                                                                                           >  1:247548/1‑148 (MQ=255)                   ctgcAATTGCAGCTGTTCGCGGGAACGCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCg                                                                                                                      <  8:262098/146‑1 (MQ=255)                        aTTGCAGCTGTTCGCTGGAACGCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGAtgtg                                                                                                                 <  4:83125/149‑1 (MQ=255)                                             gCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGc                                                                                            >  2:252548/1‑149 (MQ=255)                                             gCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGc                                                                                            >  8:35084/1‑149 (MQ=255)                                               tCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCgg                                                                                          >  1:202684/1‑149 (MQ=255)                                                 cGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTa                                                                                        >  2:257345/1‑149 (MQ=255)                                                 cGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTa                                                                                        <  1:110596/149‑1 (MQ=255)                                                   gCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACt                                                                                      <  2:20627/149‑1 (MQ=255)                                                   gCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACt                                                                                      >  2:193018/1‑149 (MQ=255)                                                   gCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACt                                                                                      >  4:123596/1‑149 (MQ=255)                                                        gcgcTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGt                                                                                 >  8:6412/1‑149 (MQ=255)                                                                 aGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAg                                                                         <  6:191749/148‑1 (MQ=255)                                                                   tCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCg                                                                                                                               <  3:10819/92‑1 (MQ=255)                                                                   tCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCg                                                                                                                               >  4:10819/1‑92 (MQ=255)                                                                   tCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGaa                                                                       >  6:84168/1‑148 (MQ=255)                                                                      gggCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTc                                                                   >  1:27118/1‑149 (MQ=255)                                                                       ggCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCTATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAAc                                                                     <  1:257345/146‑1 (MQ=255)                                                                       ggCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTc                                                                   <  2:100981/148‑1 (MQ=255)                                                                        tcgtgCACGACGCCAAGGCGCTGGTGTACGCATGTGGCGGGACGGTAGAGCTCGATTGCCAGTTCTGCACCGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCTGGTGGCGGTACTGACGTGGCCTCAGAAACTCGt                                                                 <  8:144611/145‑1 (MQ=255)                                                                         cGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTCGTc                                                                <  7:35084/149‑1 (MQ=255)                                                                          gAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTCGTCa                                                               >  4:99707/1‑149 (MQ=255)                                                                             cACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTTCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACt                                                                                      <  2:269321/123‑1 (MQ=255)                                                                             cACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACt                                                                                      >  1:269321/1‑123 (MQ=255)                                                                                   gCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTCGTCACTGAAACGt                                                      >  1:167075/1‑149 (MQ=255)                                                                                      aaGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTCGTCACTGAAACGTTaa                                                   <  4:186598/149‑1 (MQ=255)                                                                                                              gggACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTCGTCACTGAAACGTTAAATCACAGGATAATCTCCTGTCGaa                           <  2:251147/149‑1 (MQ=255)                                                                                                              gggACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTCGTCACTGAAACGTTAAATCACAGGATAATCTCCTGTCGaa                           <  2:247548/149‑1 (MQ=255)                                                                                                               ggACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGctaccgtcccgccacattcgtccaccagcgccttggcgtcgtgctcgcccagactgaccagcgcattgccggagcgttcccgcgaacagctgcaattgaagcgcagtgg                             <  6:203391‑M2/146‑110 (MQ=255)                                                                                                               ggACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGctaccgtcccgccacattcgtccaccagcgccttggcgtcgtgctcgcccagactgaccagcgcattgccggagcgttcccgcgaacagctgcaattgaagcgcagtgg                             >  5:203391‑M2/1‑37 (MQ=255)                                                                                                                gACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGctaccgtcccgccacattcgtccaccagcgccttggcgtcgtgctcgcccagactgaccagcgcattgccggagcgttcccgcgaacagctgcaattgaagcgcagtggctg                          <  4:240241‑M2/148‑113 (MQ=255)                                                                                                                gACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTCGTCACTGAAACGTTAAATCACAGGATAATCTCCTGTCGAAtt                         <  7:6412/149‑1 (MQ=255)                                                                                                                     tAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGTGGTACTGACGTGGCCTCAGAAACTCGTCACTGAAACGTTAAATCACAGGATAATCTCCTGTCGAATTgcgc                     >  8:106997/1‑148 (MQ=255)                                                                                                                          aTCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTCGTCACTGAAACGTTAAATCACAGGATAATCTCCTGTCGAATTGCGCAAAAgc               >  5:305174/1‑149 (MQ=255)                                                                                                                          aTCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTCGTCACTGAAACGTTAAATCACAGGATAATCTACTGTCGAATTGCGCAAAAgc               >  3:69526/1‑149 (MQ=255)                                                                                                                                  ccAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTCGTCACTGAAACGTTAAATcac                                              <  2:173307/110‑1 (MQ=255)                                                                                                                                         tGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGGTTGCGGGTGGCCGTACTTACCTTGCCACAGAAACTAGTGACTGAAACCTTTAATGAAATGATTATCTACAGTAGAATTTCGCAAAAGCGCACttagtacag  >  1:63673/1‑140 (MQ=255)                                                                                                                                                   |                                                                                                                                         CGATATCCAGCCACTGCGCTTCAATTGCAGCTGTTCGCGGGAACGCTCCGGCAATGCGCTGGTCAGTCTGGGCGAGCACGACGCCAAGGCGCTGGTGGACGAATGTGGCGGGACGGTAGAGATCGATTGCCAGTTCTGCAACGAGCGCTACTTCTTCGATGCCAGCGATGTGGCGCAATTGTTTGCGGGTGGCGGTACTGACGTGGCCTCAGAAACTCGTCACTGAAACGTTAAATCACAGGATAATCTCCTGTCGAATTGCGCAAAAGCGCAGTTCTGACAG  >  NC_002947/306760‑307042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.