New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1015201	54 (1.100)	3 (0.070)	3/246	NT	6.0%	coding (1040/1431 nt)	PP_0875	hypothetical protein
	?	NC_002947	= 1015224	43 (0.940)					coding (1017/1431 nt)	PP_0875	hypothetical protein

TTCGCCGCCGTAGCCGCCGGCAAGGGCGATGCCGCGCTGGCGGTCGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGTTGTCGGCAGTGCGCTGGCCGTAGGTGACCTGGCGGCTGCTTTCAC  >  NC_002947/1015083‑1015372                                                                                                                                              |                                                                                                                                                      ttCGCCGCCGTAGCCGCCGGCAAGGGCGATGCCGCGCTGGCGGTCGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGaacagg                                                                                                                                                 <  2:148137‑M2/148‑7 (MQ=255)     ccgccgTAGCCGCCGGCAAGGGCGATGCCGCGCTGGCGGTCGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAg‑cg                                                                                                                                           <  7:84581/149‑1 (MQ=255)              ccgccgGCAAGGGCGATGCCGCGCTGGCGGTCGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAGCAGGTAG‑CGGCGCAGTTc                                                                                                                                  >  4:168938/1‑149 (MQ=255)              ccgccgGCAAGGGCGATGCCGCGCTGGCGGTCGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTc                                                                                                                                  <  1:17349/149‑1 (MQ=255)                gccgGCAAGGGCGATGCCGCGCTGGCGGTCGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGa                                                                                                                                >  2:218093/1‑149 (MQ=255)                  cgGCAAGGGCGATGCCGCGCTGGCGGTCGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCg                                                                                                                                                       >  1:212652/1‑125 (MQ=255)                  cgGCAAGGGCGATGCCGCGCTGGCGGTCGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCg                                                                                                                                                       <  2:212652/125‑1 (MQ=255)                      aaGGGCGATGCCGCGCTGGCGGTCGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCgt                                                                                                                          <  5:182510/149‑1 (MQ=255)                         ggCGATGCCGCGCTGGCGGTCGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGtt                                                                                                                       >  2:93299/1‑149 (MQ=255)                                ccGCGCTGGCGGTCGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAg                                                                                                                >  6:301143/1‑149 (MQ=255)                                ccGCGCTGGCGGTCGCAAAGCATGTCTGGGCGGTAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGGTTGAGCTGCGGGCACATTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAg                                                                                                                <  3:156943/149‑1 (MQ=255)                                       ggtgggcGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGaa                                                                                                          <  4:60177/142‑1 (MQ=255)                                               cAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTcgcg                                                                                                 <  2:298042/149‑1 (MQ=255)                                                  aGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAGCCTGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCa                                                                                               <  1:218093/149‑1 (MQ=255)                                                     aTGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACg                                                                                           >  3:292021/1‑149 (MQ=255)                                                        tgtgGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGccc                                                                                        <  1:148137/149‑1 (MQ=255)                                                          tgGGCGGAAGCGTCGCGCCATGCCAAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCAc                                                                                      <  8:33047/149‑1 (MQ=255)                                                           gggCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTg                                                                                                            <  4:202349/126‑1 (MQ=255)                                                           gggCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTg                                                                                                            >  3:202349/1‑126 (MQ=255)                                                            ggCGGAAGCGTCGCGCCATGCCGATGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCAcc                                                                                     >  8:84079/1‑148 (MQ=255)                                                            ggCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTATTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCAcc                                                                                     >  4:264120/1‑148 (MQ=255)                                                                 aaGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGc                                                                                >  4:127857/1‑148 (MQ=255)                                                                    cGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGGTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATa                                                                            <  3:37818/149‑1 (MQ=255)                                                                     gTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTAGTAGAGGTTGAAGTTCTCGCGCATACTCCCACCGAAGCGa                                                                              >  3:165803/1‑146 (MQ=255)                                                                      tCGCGCCATGCCGAGGTTGCCGCGCCAGGTATGAGTGATGCGTACCTGGTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCCTCTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGc                                                                          >  2:32124/1‑149 (MQ=255)                                                                        gcgcCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCa                                                                        >  5:211139/1‑149 (MQ=255)                                                                         cgcCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCAc                                                                       >  1:71305/1‑149 (MQ=255)                                                                           ccATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTcgc                                                                                                  >  8:13976/1‑120 (MQ=255)                                                                           ccATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTcgc                                                                                                  <  7:13976/120‑1 (MQ=255)                                                                            cATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACcgc                                                                    <  3:127857/149‑1 (MQ=255)                                                                            cATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACcgc                                                                    >  7:254121/1‑149 (MQ=255)                                                                              tGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGa                                                                  <  8:254121/149‑1 (MQ=255)                                                                                 cGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCa                                                               >  7:105051/1‑149 (MQ=255)                                                                                     gTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCg                                                            >  6:235814/1‑148 (MQ=255)                                                                                       tGCCTCCACAGGTATGAGTGATTCGTACCTGTTTGAGCTGCGTGAAAATTTCTCCGAACATGTAT‑CGGCGCAGTTAGACTTCGTGTTCGTCGAGGTTTAAGTTCTCGCTCAGACGACCACCGAAGCGATAGCCACCGAGAGCACCGaa                                                          <  4:165803/148‑1 (MQ=255)                                                                                                aGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACgg                                                <  7:84079/149‑1 (MQ=255)                                                                                                   tATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGtt                                              <  2:71305/148‑1 (MQ=255)                                                                                                         tGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGTTGTCgg                                         >  5:291730/1‑147 (MQ=255)                                                                                                           aTGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGTTGTCGGCAGt                                     >  7:69489/1‑149 (MQ=255)                                                                                                            tGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGaacaggtacgcatcactcatacctggggcggcaacctcggcatggcgcgacgcttccgcccacacatgctttgcgaccgccagcgcggcatcgccctt                                                     >  1:107998‑M2/1‑35 (MQ=255)                                                                                                            tGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGaacaggtacgcatcactcatacctggggcggcaacctcggcatggcgcgacgcttccgcccacacatgctttgcgaccgccagcgcggcatcgccctt                                                     <  2:107998‑M2/133‑99 (MQ=255)                                                                                                               gTACCTGTTTGAGCTGCGGGAACAGTTCGCCGaacaggtacgcatcactcatacctggggcggcaacctcggcatggcgcgacgcttccgcccacacatgctttgcgaccgccagcgcggcatcgcccttgccggcggctacggcggc                                   <  1:61910‑M2/148‑117 (MQ=255)                                                                                                                  ccTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGTTGTCGGCAGTGCGCTgg                              <  4:271325/149‑1 (MQ=255)                                                                                                                          aGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGTTGTCGGCAGTGCGCTGGCCGTAgg                       <  5:301143/148‑1 (MQ=255)                                                                                                                            cTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGAc                                                       <  4:127350/114‑1 (MQ=255)                                                                                                                            cTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGAc                                                       >  3:127350/1‑114 (MQ=255)                                                                                                                            cTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGTTGTCGGCAGTGCGCTGGCCGTAGGTGa                    <  1:93299/149‑1 (MQ=255)                                                                                                                                gggAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGTTGTCGGCAGTGCGCTGGCCGTAGGTGACCTg                >  7:155300/1‑149 (MQ=255)                                                                                                                                   agcAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGaa                                                          <  5:6401/102‑1 (MQ=255)                                                                                                                                   agcAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGaa                                                          >  6:6401/3‑104 (MQ=255)                                                                                                                                            ccGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGTTGTCGGCAGTGCGCTGGCCGTAGGTGACCTGGCGgctgct       <  4:181459/146‑1 (MQ=255)                                                                                                                                            ccGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGTTGTCGGCAGTGCGCTGGCCGTAGGTGACCTGGCGgctgct       >  3:181459/1‑146 (MQ=255)                                                                                                                                             cGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGTTGTCGGCAGTGCGCTGGCCGTAGGTGACCTGGCGGCTGCTTTCa   <  3:264120/149‑1 (MQ=255)                                                                                                                                              gAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGTTGTCGGCAGTGCGCTGGCCGTAGGTGACCTGGCGGCTGCTTTCAc  >  7:168001/1‑149 (MQ=255)                                                                                                                                              gAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCACACGCCCACCGAAGCGATAGCCTCCGCGAGCACCGAATACCAGACGGTTGTCGGGAGTGCGCTGGCCGTAGGTGACCTGGCGGCTGCTTTCAc  <  1:32124/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                      TTCGCCGCCGTAGCCGCCGGCAAGGGCGATGCCGCGCTGGCGGTCGCAAAGCATGTGTGGGCGGAAGCGTCGCGCCATGCCGAGGTTGCCGCCCCAGGTATGAGTGATGCGTACCTGTTTGAGCTGCGGGAACAGTTCGCCGAACAGGTAG‑CGGCGCAGTTCGACTTCGTGTTCGTCGAGGTTGAAGTTCTCGCGCAGACGCCCACCGAAGCGATAGCCACCGCGAGCACCGAAGACCAGACGGTTGTCGGCAGTGCGCTGGCCGTAGGTGACCTGGCGGCTGCTTTCAC  >  NC_002947/1015083‑1015372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.