New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1710487	41 (0.840)	3 (0.060)	3/252	NT	6.9%	coding (1106/2628 nt)	ppc	phosphoenolpyruvate carboxylase
	?	NC_002947	= 1710525	41 (0.870)					coding (1144/2628 nt)	ppc	phosphoenolpyruvate carboxylase

CAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCT  >  NC_002947/1710377‑1710670                                                                                                                                                        |                                                                                                                                                  cAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCt                                                                                                                                                   >  2:153181/1‑149 (MQ=255)  aGCAACCAACCGGACGGTGACGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTt                                                                                                                                                  <  2:192936‑M2/149‑2 (MQ=255)          accGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCGGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTtcggc                                                                                                                                              <  5:264615‑M2/145‑6 (MQ=255)          accGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTtcggc                                                                                                                                              >  6:264615‑M2/1‑140 (MQ=255)            cggccggTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTtcggc                                                                                                                                              >  7:13797‑M2/1‑138 (MQ=255)            cggccggTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTtcggc                                                                                                                                              <  8:13797‑M2/143‑6 (MQ=255)                cggTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTgg                                                                                                                                    <  5:236888/149‑1 (MQ=255)                     ccGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGgccg                                                                                                                                <  1:192936/148‑1 (MQ=255)                      cGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGgccgcc                                                                                                                              >  3:212022/1‑149 (MQ=255)                                  ggACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGc                                                                                                                   >  4:143309/1‑148 (MQ=255)                                   gACATCCGCGAGCTGATCGGGCCTCTGGCGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGGTATCGCCGATGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGTT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCa                                                                                                                 <  6:190427/149‑1 (MQ=255)                                   gACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGc                                                                                                                   >  8:185045/1‑147 (MQ=255)                                   gACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCa                                                                                                                 <  3:143309/149‑1 (MQ=255)                                    aCAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAg                                                                                                                <  5:138986/149‑1 (MQ=255)                                        ccGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACg                                                                                                            >  5:302072/1‑149 (MQ=255)                                                   tCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCAc                                                                                                 >  7:187309/1‑149 (MQ=255)                                                       gccgcTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTg                                                                                             <  3:14423/149‑1 (MQ=255)                                                              gAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATgcgc                                                                                       <  4:212022/148‑1 (MQ=255)                                                              gAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATgcgc                                                                                       <  7:185045/148‑1 (MQ=255)                                                              gAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATgcg                                                                                        <  4:250155/147‑1 (MQ=255)                                                                 cTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGAc                                                                                   >  2:58961/1‑149 (MQ=255)                                                                  tgtgCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGGACTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGa                                                                                    >  1:91459/1‑149 (MQ=255)                                                                      cTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCgaga                                                                              <  6:302072/149‑1 (MQ=255)                                                                          cAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAAc                                                                          >  5:198354/1‑149 (MQ=255)                                                                           aGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAAcc                                                                         <  1:58961/149‑1 (MQ=255)                                                                               aCTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGAt                                                                      >  4:112782/1‑148 (MQ=255)                                                                                   cACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcct                                                                 <  6:198354/149‑1 (MQ=255)                                                                                   cACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcct                                                                 >  7:48665/1‑149 (MQ=255)                                                                                    aCGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcctg                                                                >  3:120283/1‑149 (MQ=255)                                                                                    aCGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcctg                                                                <  3:112782/149‑1 (MQ=255)                                                                                         tGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGAt                                                                             <  5:198226/131‑1 (MQ=255)                                                                                         tGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGAt                                                                             >  6:198226/1‑131 (MQ=255)                                                                                              tATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGc                                                      >  7:211804/1‑149 (MQ=255)                                                                                                    cGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACg                                                <  1:153181/149‑1 (MQ=255)                                                                                                       gATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTtcggcgatcacgcccataccgcattcgtgcagtgactggtagcacagctccagcggcgcgatcagctcgcggttgtccaccagcacgtcggcaccggccggt                                             <  2:275937‑M2/149‑103 (MQ=255)                                                                                                           gCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTg                                         >  7:91877/1‑149 (MQ=255)                                                                                                            ccGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTtcggcgatcacgcccataccgcattcgtgcagtgactggtagcacagctccagcggcgcgatcagctcgcggttgtccaccagcacgtcggcaccggccggttggtt                                        <  5:31114‑M2/149‑108 (MQ=255)                                                                                                             cGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGTTGACCTtcggcgatcacgcccataccgcattcgtgcagtgactggtagcacagctccagcggcgcgatcagctcgcggttgtccaccagcacgtcggcaccggccggttggtt                                        <  1:205420‑M2/149‑108 (MQ=255)                                                                                                             cGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTgg                                        >  7:19628/1‑148 (MQ=255)                                                                                                              gAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTgg                                        <  7:96805/147‑1 (MQ=255)                                                                                                              gAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTgg                                        >  8:96805/1‑147 (MQ=255)                                                                                                               aGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGAt                                     <  4:120283/149‑1 (MQ=255)                                                                                                                 gggCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATga                                   >  7:192910/1‑149 (MQ=255)                                                                                                                  ggCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATgag                                  <  8:91877/149‑1 (MQ=255)                                                                                                                              aCTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATc                      >  8:285796/1‑149 (MQ=255)                                                                                                                                       gCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtc                <  2:91459/148‑1 (MQ=255)                                                                                                                                         gtcgtGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtcctc             <  8:19628/149‑1 (MQ=255)                                                                                                                                          tcgtGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtcctcc            <  7:285796/149‑1 (MQ=255)                                                                                                                                            gtGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGAc                                           >  2:156297/1‑116 (MQ=255)                                                                                                                                            gtGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGAc                                           <  1:156297/116‑1 (MQ=255)                                                                                                                                                     aCCTtcggcgatcacgcccataccgcattcgtgcagtgactggtagcacagctccagcggcgcgatcagctcgcggttgtccaccagcacgtcggcaccggccggttggttgctggtcaaggccgaatgcgcccatgcgcgtgtcgcac  >  1:275937‑M2/1‑4 (MQ=255)                                                                                                                                                        |                                                                                                                                                  CAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTG‑‑CTTGCGTCGTGCGGT‑GACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCT  >  NC_002947/1710377‑1710670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.