New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1744020	52 (1.060)	3 (0.060)	3/248	NT	6.0%	coding (192/921 nt)	PP_1541	putative Methyltransferase
	?	NC_002947	= 1744048	45 (0.970)					coding (164/921 nt)	PP_1541	putative Methyltransferase

ATGGAAGTGTGGCCACAGGTGCCGCTGGTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCCGCGGCAATGAGGTTGCGGAGCCACTGCGCGGCGTATGGGTCGATCTCGTT  >  NC_002947/1743903‑1744196                                                                                                                                                   |                                                                                                                                                     aTGGAAGTGTGGCCACAGGTGCCGCTGGTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGAcgc                                                                                                                                                   <  3:138556‑M2/149‑4 (MQ=255)  tGGAAGTGTGGCCACAGGTGCCGCTGGTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGAcgcc                                                                                                                                                  <  5:179050‑M2/149‑5 (MQ=255)    gAAGTGTGGCCACAGGTGCCGCTGGTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGAcgccgg                                                                                                                                                <  1:47994‑M2/149‑7 (MQ=255)        tgtgGCCACAGGTGCCGCTGGTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCgaa                                                                                                                                            <  6:179050/149‑1 (MQ=255)           ggCCACAGGTGCCGCTGGTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCgaag                                                                                                                                           >  5:185271/1‑147 (MQ=255)            gCCACAGGTGCCGCTGGTCATCTAACCAAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGaagaag                                                                                                                                        <  4:196881/149‑1 (MQ=255)               acaGGTGCCGCTGGTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTgg                                                                                                                                     <  4:138556/149‑1 (MQ=255)                   gTGCCGCTGGTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCAtt                                                                                                                                 >  5:169087/1‑149 (MQ=255)                      ccGCTGGTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTgg                                                                                                                               <  3:67236/148‑1 (MQ=255)                      ccGCTGGTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTgg                                                                                                                               >  4:67236/1‑148 (MQ=255)                        gCTGGTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGgtg                                                                                                                            >  3:23349/1‑149 (MQ=255)                            gTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAg                                                                                                                        >  2:112154/1‑149 (MQ=255)                               atcaAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCt                                                                                                                     >  7:275081/1‑149 (MQ=255)                                tcaAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCgaagaa                                                                                                                                         <  2:107240/128‑1 (MQ=255)                                tcaAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCgaagaa                                                                                                                                         >  1:107240/1‑128 (MQ=255)                                tcaAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCtt                                                                                                                    >  2:281906/1‑149 (MQ=255)                                tcaAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCtt                                                                                                                    <  6:169087/149‑1 (MQ=255)                                  aaaCCCTGCTCCAGCGCCTGCCGCGCTGAAAGGTTGGCACTGACAGGAACCGGTCCAAACATGTCGATCATCTGGCGAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCTAAGAAGTGGCATTGGGTGTAAGGCTTGa                                                                                                                  <  8:94857/149‑1 (MQ=255)                                    aCCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTg                                                                                                                                      <  5:154297/127‑1 (MQ=255)                                    aCCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTg                                                                                                                                      >  6:154297/1‑127 (MQ=255)                                    aCCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAgg                                                                                                                >  6:263405/1‑149 (MQ=255)                                        aGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCAt                                                                                                            >  6:102322/1‑149 (MQ=255)                                            cccGCGCCTGCCGCGCTGAAAGCTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCAGGCGAAGAAGTGGCAATGGGTGTAAGGCTTGAGGTCATCggg                                                                                                        >  8:171504/1‑149 (MQ=255)                                             ccGCGCCTGCCGCGCTGAAAGGTTGGCACGGCCAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGGAAGGCTTGAGGTCATCgggg                                                                                                       >  6:98723/1‑149 (MQ=255)                                             ccGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCTAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGACGACGCAGGCGAAGAAGTGGAATTGGGTGTATGGCTTGAGGTAATCgggg                                                                                                       >  6:94508/1‑149 (MQ=255)                                             ccGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCggg                                                                                                        <  1:281906/148‑1 (MQ=255)                                                cgcCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGc                                                                                                    <  2:47994/149‑1 (MQ=255)                                                    tGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCCTAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACAt                                                                                                >  1:304091/1‑149 (MQ=255)                                                       cgcgCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCt                                                                                             <  5:102322/149‑1 (MQ=255)                                                          gcTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCtcga                                                                                          <  6:185271/149‑1 (MQ=255)                                                            tGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCCTGCCGCGACGAAGGCCATAGGACCAACCCCCCACGCCGGCCAAGAAGTGGCATTCGGTTTAAGGCTTGAGTTCATCGGGGTGCACATCCtcgaa                                                                                         >  1:83822/1‑148 (MQ=255)                                                               aaGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAg                                                                                     <  8:275081/149‑1 (MQ=255)                                                                  gTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGt                                                                                  >  6:90217/1‑149 (MQ=255)                                                                  gTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGt                                                                                  >  1:251724/1‑149 (MQ=255)                                                                         cGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTa                                                                           <  2:251724/149‑1 (MQ=255)                                                                           gACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTgg                                                                                                                               <  5:57378/95‑1 (MQ=255)                                                                           gACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTgg                                                                                                                               >  6:57378/1‑95 (MQ=255)                                                                              aGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCg                                                                      >  4:111613/1‑149 (MQ=255)                                                                                         cAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGa                                                            >  3:147831/1‑148 (MQ=255)                                                                                              aGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGc                                                      <  1:112154/149‑1 (MQ=255)                                                                                                gTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGccc                                                    >  2:6163/1‑149 (MQ=255)                                                                                                gTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGacc                                                    >  5:231549/1‑149 (MQ=255)                                                                                                   gATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCcgcg                                                 <  4:23349/149‑1 (MQ=255)                                                                                                            gCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCCGCGGCAATGa                                          <  2:73370/147‑1 (MQ=255)                                                                                                            gCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCCGCGGCAATGAgg                                        >  5:255900/1‑149 (MQ=255)                                                                                                               aGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGAcgccggctggccagatgatcgacctgtttggacgggttcctgtccgtgccaacctttcagcgcggcaggcgcgggagctgggtttgatgaccagcggcacctgtggccaca                                       >  1:96256‑M2/1‑36 (MQ=255)                                                                                                               aGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGAcgccggctggccagatgatcgacctgtttggaccggttcctgtccgtgccaacctttcagcgcggcaggcgcgggagctgggtttgatgaccagcggcacctgtggccaca                                       <  2:96256‑M2/147‑112 (MQ=255)                                                                                                                gCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGAcgccggctggccagatgatcgacctgtttggaccggttcctgtccgtgccaacctttcagcgcggcaggcgcgggagctgggtttgatgaccagcggcacctgtggccacactt                                    <  3:142235‑M2/149‑115 (MQ=255)                                                                                                                              aGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGGCATCGGGGGGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCCGCGGCAATGAGGTTGCGGAGCCACTgcgc                       <  5:247970/149‑1 (MQ=255)                                                                                                                                 gCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCCGCGGCAATGAGGTTGCGGAGCCACTGCgcggc                    <  5:90217/149‑1 (MQ=255)                                                                                                                                 gCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCCGCGGCAATGAGGTTGCGGAGCCACTGCgcggc                    <  2:83822/149‑1 (MQ=255)                                                                                                                                   aTAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCCGCGGCAATGAGGTTGCGGa                                 <  4:257705/134‑1 (MQ=255)                                                                                                                                     aGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCCGCGGCAATGAGGTTGCGGAGCCACTGCGCGGCGTAt                >  8:30546/1‑149 (MQ=255)                                                                                                                                                 cgacgccgGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCCGCGGCAATGAGGTTGCGGAGCCACTGCGCGGCGTATGGGTCGATCTCg    <  5:263405/149‑1 (MQ=255)                                                                                                                                                  gacgccgGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCCGCGGCAATGAGGTTGCGGAGCCACTGCGCGGCGTATGGGTCGATCTCGt   >  1:78708/1‑149 (MQ=255)                                                                                                                                                   acgccgGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCCGCGGCAATGAGGTTGCGGAGCCACTGCGCGGCGTATGGGTCGATCTCGtt  <  4:147831/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     ATGGAAGTGTGGCCACAGGTGCCGCTGGTCATCAAACCCAGCTCCCGCGCCTGCCGCGCTGAAAGGTTGGCACGGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCC‑GGCGCGACGAAGGGCATAGGACCAAACGCCGACGCCGGCGAAGAAGTGGCATTGGGTGTAAGGCTTGAGGTCATCGGGGTGCACATCCTCGATCGAGCGTTCGTCTACGTCGCCTGGCGCGATATGGCCCGCGGCAATGAGGTTGCGGAGCCACTGCGCGGCGTATGGGTCGATCTCGTT  >  NC_002947/1743903‑1744196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.