New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1866624	39 (0.800)	3 (0.060)	3/248	NT	6.7%	coding (342/534 nt)	PP_1670	lipoprotein
	?	NC_002947	= 1866651	46 (0.990)					coding (369/534 nt)	PP_1670	lipoprotein

CGGCCTGATCAAGTATGTGTACCGTGATGCTGCTGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTGGGCCAAGGCCTACCTGCAGGCCAAGCGGGTGATTCCGCAAGGGCATC  >  NC_002947/1866504‑1866799                                                                                                                                                    |                                                                                                                                                     cGGCCTGATCAAGTATGTGTACCGTGATGCTGCTGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGc                                                                                                                                                     >  1:221415‑M2/1‑148 (MQ=255)   gCCTGATCAAGTATGTGTACCGTGATGCTGCTGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGcag                                                                                                                                                   <  2:275483‑M2/149‑4 (MQ=255)     cTGATCAAGTATGTGTACCGTGATGCTGCTGGAATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGAGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACAAGTGGCGGCTCGcaggt                                                                                                                                                 <  6:80470‑M2/149‑6 (MQ=255)      tGATCAAGTATGTGTACCGTGATGCTGCTGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGcaggt                                                                                                                                                 <  8:68825‑M2/148‑6 (MQ=255)         tCAAGTATGTGTACCGTGATGCTGCTGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGc                                                                                                                                             <  3:206424/149‑1 (MQ=255)                 gtgtACCGTGATGCTGCTGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCgg                                                                                                                                     >  1:17414/1‑149 (MQ=255)                    tACCGTGATGCTGCTGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCAt                                                                                                                                  <  6:156009/149‑1 (MQ=255)                     aCCGTGATGCTGCTGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCAt                                                                                                                                  <  8:218849/148‑1 (MQ=255)                      ccGTGATGCTGCTGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATc                                                                                                                                 >  7:211420/1‑148 (MQ=255)                           aTGCTGCTGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGca                                                                                                                                                    >  4:59254‑M2/1‑122 (MQ=255)                           aTGCTGCTGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGca                                                                                                                                                    <  3:59254‑M2/124‑3 (MQ=255)                             gctgctGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGc                                                                                                                                        >  7:184156/1‑134 (MQ=255)                             gctgctGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGc                                                                                                                                        <  8:184156/134‑1 (MQ=255)                             gctgctGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCgg                                                                                                                         >  8:186756/1‑149 (MQ=255)                              ctgctgGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCgg                                                                                                                         <  1:206908/148‑1 (MQ=255)                               tgctgGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTc                                                                                                                           <  7:135885/145‑1 (MQ=255)                               tgctgGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTc                                                                                                                           >  8:135885/1‑145 (MQ=255)                                  tgGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACg                                                                                                                    >  6:74907/1‑149 (MQ=255)                                     cATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGgc                                                                                                                 <  8:211420/149‑1 (MQ=255)                                      aTCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGgcg                                                                                                                >  4:94373/1‑149 (MQ=255)                                               ccGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGtgc                                                                                                        <  2:17414/148‑1 (MQ=255)                                               ccGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGGCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGtgc                                                                                                        <  5:80470/148‑1 (MQ=255)                                                        aCGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTc                                                                                              >  3:51401/1‑149 (MQ=255)                                                               agaTGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGt                                                                                       <  1:153263/149‑1 (MQ=255)                                                               agaTGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGt                                                                                       <  3:94373/149‑1 (MQ=255)                                                               agaTGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGt                                                                                       <  6:95587/149‑1 (MQ=255)                                                                 atgatTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTgg                                                                                     >  2:72739/1‑149 (MQ=255)                                                                   gatTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCa                                                                                   >  8:20086/1‑149 (MQ=255)                                                                        tCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTg                                                                              >  2:215917/1‑149 (MQ=255)                                                                              gcgcACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTg                                                                        <  1:275483/149‑1 (MQ=255)                                                                               cgcACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGt                                                                               >  7:266796/1‑141 (MQ=255)                                                                               cgcACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGt                                                                               <  8:266796/141‑1 (MQ=255)                                                                                  aCCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACt                                                                    <  5:74907/149‑1 (MQ=255)                                                                                    ccACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTAc                                                                  >  5:86203/1‑149 (MQ=255)                                                                                     cACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTAcc                                                                 <  6:86203/149‑1 (MQ=255)                                                                                          tGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTc                                                             >  2:199345/1‑148 (MQ=255)                                                                                                 cAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACa                                                        >  2:269368/1‑146 (MQ=255)                                                                                                 cAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACa                                                        <  1:269368/146‑1 (MQ=255)                                                                                                       gCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTgg                                                <  7:186756/148‑1 (MQ=255)                                                                                                       gCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTgg                                                <  1:72739/148‑1 (MQ=255)                                                                                                                cGGTGCCCTGGTGTTCTTCGCCACCAGTGGCGGCTCGcaggtcaccggactgcagcgaactggcatccaccgtgggtgcgcgcatgacaatcatctctcgcgtcgagcgcggcagactgatgccagcagcatcacggtacacatactt                                       <  1:55323‑M2/148‑112 (MQ=255)                                                                                                                 ggTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGcaggtcaccggactgcagcgaactggcatccaccgtgggtgcgcgcatgacaatcatctctcgcgtcgagcgcggcagactgatgccagcagcatcacggtacacatacttga                                     <  2:243716‑M2/149‑114 (MQ=255)                                                                                                                  gTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTGGGCCAAGGCCTAc                                    >  6:63917/1‑149 (MQ=255)                                                                                                                       cTGGTGTTCTTCGCCACCAGTGGCGGCTCGcaggtcaccggactgcagcgaactggcatccaccgtgggtgcgcgcatgacaatcatctctcgcgtcgagcgcggcagactgatgccagcagcatcacggtacacatacttgatcaggc                               >  1:243716‑M2/1‑30 (MQ=255)                                                                                                                        tGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTa                                                                   >  6:104685/1‑112 (MQ=255)                                                                                                                        tGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTa                                                                   <  5:104685/112‑1 (MQ=255)                                                                                                                        tGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTc                                                             <  1:110911/118‑1 (MQ=255)                                                                                                                        tGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTc                                                             >  2:110911/1‑118 (MQ=255)                                                                                                                        tGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTgg                                                <  1:1202/131‑1 (MQ=255)                                                                                                                        tGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTgg                                                >  2:1202/1‑131 (MQ=255)                                                                                                                          gtgtTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTGGGCCAAGGCCTACCTGCAGGc                            >  1:33855/1‑149 (MQ=255)                                                                                                                             ttcttcGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTGGGCCAAGGCCTACCTGCAGGCCaa                         >  6:96658/1‑149 (MQ=255)                                                                                                                                         aGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTGGGCCAAGGCCTACCTGCAGGCCAAGCGGGTGATTcc             >  2:108101/1‑149 (MQ=255)                                                                                                                                             gcggcTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTGGGCCAAGGCCTACCTGCAGGCCAAGCGGGTGATTCCGc           >  3:39885/1‑147 (MQ=255)                                                                                                                                               ggcTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTGGGCCAAGGCCTACCTGCAGGCCAAGCGGGTGATTCCGCAAgg       <  7:20086/149‑1 (MQ=255)                                                                                                                                               ggcTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTGGGCCAAGGCCTACCTGCAGGCCAAGCGGGTGATTCCGCAAgg       <  5:63917/149‑1 (MQ=255)                                                                                                                                                    gCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTGGGCCAAGGCCTACCTGCAGGCCAAGCGGGTGATTCCGCAAGGGCATc  >  4:231680/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CGGCCTGATCAAGTATGTGTACCGTGATGCTGCTGGCATCAGTCTGCCGCGCTCGACGCGAGAGATGATTGTCATGCGCGCACCCACGGTGGATGCCAGTTCGCTGCAGTCCGGTGACCTGGTGTTCTTCGCCACCAGTGGCGGCTCGCAGGTCAGCCATGCCGGCATCTATGTCGGGGACGGGCGCTTCGTGCATGCACCTTCCACCGGTGGCACCGTGCGCCTGGACTACCTGTCGAACAGCTACTGGGCCAAGGCCTACCTGCAGGCCAAGCGGGTGATTCCGCAAGGGCATC  >  NC_002947/1866504‑1866799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.