| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2258059 | NA (NA) | 5 (0.110) | 4/246 | NT | 18.2% | intergenic (+114/‑278) | PP_1990/asd | transposase/aspartate‑semialdehyde dehydrogenase |
| ? | NC_002947 | = 2258152 | 24 (0.490) | intergenic (+207/‑185) | PP_1990/asd | transposase/aspartate‑semialdehyde dehydrogenase | |||||
TCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTAAAG > NC_002947/2258057‑2258299 | tCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagc < 2:217488‑M2/149‑54 (MQ=255) cGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgaggggagcgccgcgt < 5:287735‑M2/149‑56 (MQ=255) gCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttt < 6:272377‑M2/149‑58 (MQ=255) ccGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaacagcaa < 5:27247/149‑1 (MQ=37) cGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaacagcaac < 6:60677/149‑1 (MQ=37) cGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaacagcaa > 5:255772/1‑148 (MQ=37) cGAACGCCCCATCCTTGGGGCTCATGGGTTGACGGGCATCCATGCCCGTCACCTGCCTCCGGAATGGCTGGGTTCGGCCTCCTGAATTCGCGAATGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaacagcaa < 1:79465/149‑1 (MQ=11) tgaGGCCCCAGGATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaacagcaaca > 6:183060/3‑149 (MQ=255) ccccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAAt < 6:276368/149‑1 (MQ=40) tCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAcagcaacagcaacagcaa > 6:255252/1‑133 (MQ=40) tCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAcagcaacagcaacagcaa < 5:255252/133‑1 (MQ=40) aGCGCTTGACGGGCATCCATGCCAGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGc > 4:274642/1‑148 (MQ=255) gcgcTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCaa < 3:174872/149‑1 (MQ=255) cgcTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAAc > 3:238739/1‑149 (MQ=255) gcTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAAc > 5:174138/1‑148 (MQ=255) aTCCATGCCCGTCACCTGCCTCCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgacgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaa > 1:217488‑M2/1‑31 (MQ=255) cATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAACTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGcaca < 2:152783/149‑1 (MQ=255) aTGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGCGGcactt > 2:180929/1‑147 (MQ=255) cccGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTAc < 7:248585/117‑1 (MQ=255) cccGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTAc > 8:248585/1‑117 (MQ=255) cccGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGAc < 6:255772/148‑1 (MQ=255) ccGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACaa < 3:48908/149‑1 (MQ=255) ccTGCCTCCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggtttt > 5:272377‑M2/1‑17 (MQ=255) ccTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCACCAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAAccc > 5:144305/1‑148 (MQ=255) cTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTa < 5:237182/149‑1 (MQ=255) cTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTa < 3:274642/149‑1 (MQ=255) cTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGAACATCCAAAACCCTa > 6:237182/1‑149 (MQ=255) cGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGATAGAGCAATAGGCAACGCAGGGCGAGGCACAGACAACACACTACAATcag > 8:69446/1‑147 (MQ=21) gCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggcttt > 2:17685‑M2/1‑8 (MQ=255) cAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAACATCAAGATAAACAGCAACAGCAACAGCAATAACAACACCAATAGGCAACTCTGGGGGAGGCACAGACAAAACCCTa > 7:107303/1‑140 (MQ=21) aaGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttga > 6:125524‑M2/1‑6 (MQ=255) gCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttgatga > 5:127594‑M2/1‑3 (MQ=255) gCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggacatccctttcaaggtcttttggttttggcggctttgatga < 8:185080‑M2/149‑147 (MQ=255) gCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagg > 7:21897‑M2/1‑3 (MQ=255) gCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagg < 8:21897‑M2/107‑105 (MQ=255) cggcgtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttgatgacc > 4:14780‑M2/1‑1 (MQ=255) cggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagtgccatccctttcaaggtcttttggttttggcggcattgatgacc < 4:198104‑M2/149‑149 (MQ=255) | TCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAA‑GATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTAAAG > NC_002947/2258057‑2258299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |