New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3289791 =	52 (1.060)	3 (0.060)	3/248	NT	6.1%	coding (823/1752 nt)	PP_2892	hypothetical protein
	?	NC_002947	3289839 =	43 (0.930)					coding (871/1752 nt)	PP_2892	hypothetical protein

ATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCTTTGCCGGCGGCTAC  >  NC_002947/3289693‑3289985                                                                                                                                                    |                                                                                                                                                   atgtcataccacaggccgacgttctggcgcggggccgacagttcggtttcccagccatagctgtggccttgtgggttgacccagtggcgggtccagttGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAAc                                                                                                                                                  >  8:165172‑M1/99‑149 (MQ=255)  tttCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACt                                                                                                                                                 <  6:305777/149‑1 (MQ=255)      gAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGAc                                                                                                                                             >  3:263623/1‑149 (MQ=255)            caggccgacgttctggcgcggggccgacagttcggtttcccagccatagctgtggccttgtgggttgacccagtggcgggtccagttGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTg                                                                                                                                                >  4:129866‑M1/88‑140 (MQ=255)            caggccgacgttctggcgcggggccgacagttcggtttcccagccatagctgtggccttgtgggttgacccagtggcgggtccagttGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTg                                                                                                                                                <  3:129866‑M1/53‑1 (MQ=255)                gcgTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGTCGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTgg                                                                                                                                   <  6:10577/149‑1 (MQ=255)                gcgTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTgg                                                                                                                                   <  7:120554/149‑1 (MQ=255)                gcgTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTgg                                                                                                                                   <  3:208597/149‑1 (MQ=255)                gcgTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTgg                                                                                                                                   <  1:15905/149‑1 (MQ=255)                             gcCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACaa                                                                                                                       <  1:234325/149‑1 (MQ=255)                               ccACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGc                                                                                                                    >  6:101010/1‑149 (MQ=255)                                   tgctgctgTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCca                                                                                                                  >  3:119226/1‑147 (MQ=255)                                        ctgTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTAt                                                                                                           >  2:147792/1‑149 (MQ=255)                                          gtgGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTgg                                                                                                                                               >  2:226700/1‑111 (MQ=255)                                          gtgGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTgg                                                                                                                                               <  1:226700/111‑1 (MQ=255)                                           tgGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATg                                                                                                          <  1:147792/147‑1 (MQ=255)                                           tgGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGc                                                                                                        <  4:263623/149‑1 (MQ=255)                                           tgGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGc                                                                                                        <  5:101010/149‑1 (MQ=255)                                            gggCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCt                                                                                                       >  3:142139/1‑149 (MQ=255)                                             ggCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCTTAAACCACGCACCATGTGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTg                                                                                                      <  5:257795/149‑1 (MQ=255)                                              gCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTgg                                                                                                     <  3:288124/149‑1 (MQ=255)                                                   gaagTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTggg                                                                                                                                  >  1:118896/1‑115 (MQ=255)                                                   gaagTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTggg                                                                                                                                  <  2:118896/115‑1 (MQ=255)                                                   gaagTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAAc                                                                                                <  5:35373/149‑1 (MQ=255)                                                        cccGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTAt                                                                                                           <  5:56634/133‑1 (MQ=255)                                                        cccGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTAt                                                                                                           >  6:56634/1‑133 (MQ=255)                                                           ggTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGt                                                                                        >  3:160460/1‑149 (MQ=255)                                                            gTGGATGTTCATCTGGAAACCCGTAGACCACGCACCATGGGCCTTGACCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTc                                                                                       >  1:66642/1‑149 (MQ=255)                                                                         tGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCgcgc                                                                             >  1:154384/1‑146 (MQ=255)                                                                          ggAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAg                                                                          >  1:297246/1‑148 (MQ=255)                                                                          ggAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAg                                                                          >  7:274868/1‑148 (MQ=255)                                                                           gAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTgg                                                                                                     >  3:78128/1‑120 (MQ=255)                                                                           gAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTgg                                                                                                     <  4:78128/120‑1 (MQ=255)                                                                           gAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAg                                                                          <  4:142139/147‑1 (MQ=255)                                                                                 cGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCgg                                                                  >  3:28627/1‑149 (MQ=255)                                                                                 cGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCgg                                                                  >  6:158802/1‑149 (MQ=255)                                                                                  gTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGc                                                                 <  5:158802/149‑1 (MQ=255)                                                                                  gTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGc                                                                 <  2:297246/149‑1 (MQ=255)                                                                                       ccACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCtgtg                                                            <  4:28627/149‑1 (MQ=255)                                                                                         aCGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTgg                                                           >  2:191392/1‑148 (MQ=255)                                                                                         aCGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGt                                                          <  8:274868/149‑1 (MQ=255)                                                                                             aCCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGa                                                      <  4:119226/149‑1 (MQ=255)                                                                                               cagttggccttgccgcgcggcccgacgtcggtcgagaagcccaggccaaggccAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCtg                                                              <  3:129866‑M2/87‑1 (MQ=255)                                                                                               cagttggccttgccgcgcggcccgacgtcggtcgagaagcccaggccaaggccAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCtg                                                              >  4:129866‑M2/54‑140 (MQ=255)                                                                                                 gttggccttgccgcgcggcccgacgtcggtcgagaagcccaggccaaggccAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACAt                                                   >  8:165172‑M2/52‑149 (MQ=255)                                                                                                   GGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTc                                                 >  2:154384‑M1/1‑148 (MQ=255)                                                                                                             tGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACccg                                      >  3:93863/1‑149 (MQ=255)                                                                                                               ggCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACccg                                      <  4:93863/147‑1 (MQ=255)                                                                                                                    ctcGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCcgccgc                                  >  7:76235/1‑146 (MQ=255)                                                                                                                    ctcGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCcgccgc                                  <  8:76235/146‑1 (MQ=255)                                                                                                                               gTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGtt                     <  1:191392/149‑1 (MQ=255)                                                                                                                                             caaggccAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCTTTGCcggcg       <  7:165172‑M2/142‑1 (MQ=255)                                                                                                                                               aggccAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCTTTGCCggcggc     >  2:291974‑M2/6‑149 (MQ=255)                                                                                                                                                  ccAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCTTTGCCGGCGGCTAc  <  1:291974‑M2/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   ATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGA‑CCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCTTTGCCGGCGGCTAC  >  NC_002947/3289693‑3289985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.