New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3437861	49 (1.000)	3 (0.070)	3/244	NT	6.1%	coding (102/741 nt)	PP_3057	pectinesterase
	?	NC_002947	= 3437912	47 (1.030)					coding (153/741 nt)	PP_3057	pectinesterase

GAAACTGAAATTGCAGGCCTCTCCAGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAGACTATACGCTCGCCGAAAGCTTGGTGGTGG  >  NC_002947/3437769‑3438051                                                                                                                                                 |                                                                                                                                            gAAACTGAAATTGCAGGCCTCTCCAGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGatcgg                                                                                                                                        >  1:22395‑M2/1‑144 (MQ=255)  aaaCTGAAATTGCAGGCCTCTCCAGCAAGGTAACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCTCTCCGCCGGCCA‑TCACGCGAACGTGCTACGTCAAACAGTTGatcg                                                                                                                                         <  4:225622‑M2/147‑5 (MQ=255)   aaCTGAAATTGCAGGCCTCTCCAGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGatcggc                                                                                                                                       <  4:148076‑M2/148‑7 (MQ=255)     cTGAAATTGCAGGCCTCTCCAGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGatcggcgat                                                                                                                                    >  4:274359‑M2/1‑140 (MQ=255)         aaTTGCAGGCCTCTCCAGCAAGGTCACCTCGCTGATCGTCTACGTCACCAGCTTCAAAAGTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGAc                                                                                                                                 <  2:217433/148‑1 (MQ=255)          aTTGCAGGCCTCTCCAGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACaa                                                                                                                               >  2:270596/1‑149 (MQ=255)             gCAGGCCTCTCCAGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATg                                                                                                                             <  1:196598/148‑1 (MQ=255)               aGGCCTCTCCAGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATgcgc                                                                                                                          >  6:117028/1‑149 (MQ=255)                 gCCTCTCCAGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCtt                                                                                                                        <  3:148076/149‑1 (MQ=255)                   ctctCCAGCAAGGTCACCTCGCTGATCGAGTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTgg                                                                                                                      <  5:90699/149‑1 (MQ=255)                   atctcCAGCAAGGTCACGTCGCTGATCGACTACGTCACGAGCTTCAATACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTgg                                                                                                                      <  3:225622/148‑1 (MQ=255)                    tctcCAGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTgg                                                                                                                      >  3:128283/1‑148 (MQ=255)                        cAGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAAtt                                                                                                                 >  1:83285/1‑149 (MQ=255)                         aGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTc                                                                                                                >  8:210924/1‑149 (MQ=255)                         aGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTc                                                                                                                <  7:210924/149‑1 (MQ=255)                             aGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGAt                                                                                                            <  5:112605/149‑1 (MQ=255)                                  aCCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGcc                                                                                                        >  7:23250/1‑148 (MQ=255)                                    cTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTc                                                                                                                >  4:13369/1‑138 (MQ=255)                                    cTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTc                                                                                                                <  3:13369/138‑1 (MQ=255)                                              gACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCAt                                                                                           >  7:216112/1‑149 (MQ=255)                                                     tCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGa                                                                                    <  2:83285/149‑1 (MQ=255)                                                         cAGCTTCAAAACTTCTTGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGa                                                                                                             <  2:96594/120‑1 (MQ=255)                                                         cAGCTTCAAAACTTCTGGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGa                                                                                                             >  1:96594/1‑120 (MQ=255)                                                               cAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCAGTCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATcgcc                                                                           >  1:80360/1‑149 (MQ=255)                                                                aaaaCTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATagccgc                                                                         >  7:278060/1‑149 (MQ=255)                                                                    cTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCACTACg                                                                     >  4:88290/1‑149 (MQ=255)                                                                             cTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGatcggcgattgctttagcactagaagttttgaagctggtgacgtagtcgatcagcgag                                                                                   >  8:99227‑M2/1‑68 (MQ=255)                                                                             cTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGatcggcgattgctttagcactagaagttttgaagctggtgacgtagtcgatcagcgag                                                                                   <  7:99227‑M2/126‑59 (MQ=255)                                                                             cTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGc                                                            <  8:23250/149‑1 (MQ=255)                                                                                aaGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCggg                                                         >  6:243739/1‑149 (MQ=255)                                                                                aaGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCgg                                                          <  5:117028/148‑1 (MQ=255)                                                                                aaGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCgg                                                          <  6:249733/148‑1 (MQ=255)                                                                                aaGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCg                                                           <  5:242166/147‑1 (MQ=255)                                                                                   cAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGccc                                                                                      >  8:242185/1‑117 (MQ=255)                                                                                   cAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGccc                                                                                      <  7:242185/117‑1 (MQ=255)                                                                                    aaTCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAg                                                     >  3:52194/1‑149 (MQ=255)                                                                                     aTCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGatcggcgattgctttagcactagaagttttgaagctggtgacgtagtcgatcagcgaggtgaccttgctggagaggcctgcaatttcag                                                    <  8:101420‑M2/149‑90 (MQ=255)                                                                                        gCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGa                                                 <  8:216112/149‑1 (MQ=255)                                                                                          cGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGAca                                               >  2:201323/1‑149 (MQ=255)                                                                                               cGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCAtt                                          <  4:128283/149‑1 (MQ=255)                                                                                                     ccGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAg                                                                                   <  1:63184/102‑1 (MQ=255)                                                                                                     ccGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAg                                                                                   >  2:63184/1‑102 (MQ=255)                                                                                                      cGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAAc                                                                                              <  2:275570/90‑1 (MQ=255)                                                                                                      cGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAAc                                                                                              >  1:275570/1‑90 (MQ=255)                                                                                                           cgcCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAg                                <  1:270596/147‑1 (MQ=255)                                                                                                           cgcCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAGa                               <  6:294278/148‑1 (MQ=255)                                                                                                           cgcCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAGa                               <  5:214393/148‑1 (MQ=255)                                                                                                             ccGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAAACATTGCACGAGACATCGCCGCTACGCCGAATCGAGGGTTAGCGGACATAATTATGGTCGAAAACt                             >  5:83055/1‑148 (MQ=255)                                                                                                                gCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAGACTATAc                         <  4:52194/149‑1 (MQ=255)                                                                                                                         gcgAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAGACTATACGCTc                     <  1:201323/145‑1 (MQ=255)                                                                                                                               gTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAGACTATACGCTCGCCGAAAGCt           >  6:78849/1‑149 (MQ=255)                                                                                                                                   tACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAGACTATACGCTCGCCGAAAGCTtggt       >  6:94468/1‑149 (MQ=255)                                                                                                                                      gTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAGACta                            >  7:145406/1‑125 (MQ=255)                                                                                                                                      gTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAGACta                            <  8:145406/125‑1 (MQ=255)                                                                                                                                        cAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAGACTATACGCTCGCCAAAAGCTtggtggtgg  >  8:66453/1‑149 (MQ=255)                                                                                                                                         aaCCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAGACTATACGCTCGCCGAAAGCTtggtggtgg  <  8:278060/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                            GAAACTGAAATTGCAGGCCTCTCCAGCAAGGTCACCTCGCTGATCGACTACGTCACCAGCTTCAAAACTTCTAGTGCTAAAGCAATCGCCGATGCGGTGGCCGCTGCGCCGGCCA‑TCTCGCGAACGTTCTACGTCAACCAGTTGATCGGCGATGACAATGCGCTTGGTAATTCGGATAGCCCACTCAAAACCATTGCCCGAGCCATCGCCGCTACGCCGAATGGCGGGTTAGCGGACATCATTCTGGTCGAAGACTATACGCTCGCCGAAAGCTTGGTGGTGG  >  NC_002947/3437769‑3438051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.