New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3479266	45 (0.920)	3 (0.060)	3/250	NT	6.3%	coding (1953/2496 nt)	PP_3090	OmpA domain‑containing protein
	?	NC_002947	= 3479310	47 (1.010)					coding (1909/2496 nt)	PP_3090	OmpA domain‑containing protein

GGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCCGAAATTGGCGATCGACTGGGCGCGGTTGTCATGGGGCAGCG  >  NC_002947/3479163‑3479456                                                                                                                                                    |                                                                                                                                                   ggAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATg                                                                                                                                                   <  7:175012‑M2/149‑2 (MQ=255)    aGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATggcc                                                                                                                                                >  8:4668‑M2/1‑145 (MQ=255)        gTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCggg                                                                                                                                             >  1:149187/1‑148 (MQ=255)           gTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTAc                                                                                                                                          <  7:206123/148‑1 (MQ=255)              gAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCag                                                                                                                                       >  8:11009/1‑148 (MQ=255)                     cgcgGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCgg                                                                                                                               <  6:294168/149‑1 (MQ=255)                     cgcgGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCgg                                                                                                                               <  7:267445/149‑1 (MQ=255)                     cgcgGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCg                                                                                                                                <  8:175012/148‑1 (MQ=255)                              tCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCATGATTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTATTCCGGCAGGTgcgc                                                                                                                      >  7:194059/1‑149 (MQ=255)                                 ggCTCTCGGTTCTGGTTTCTTTAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGTGGTCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCt                                                                                                                    <  8:194059/148‑1 (MQ=255)                                    tCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCtt                                                                                                                   >  2:63055/1‑146 (MQ=255)                                    tCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTga                                                                                                                 >  2:35191/1‑148 (MQ=255)                                       cGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGaaa                                                                                                             >  6:155276/1‑149 (MQ=255)                                        ggATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAAc                                                                                                            <  1:63055/149‑1 (MQ=255)                                                     ataGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCAt                                                                                               >  8:69752/1‑149 (MQ=255)                                                      taGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCa                                                                                                <  7:238551/147‑1 (MQ=255)                                                          aCGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTcg                                                                                          >  7:1824/1‑149 (MQ=255)                                                             tGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCgcgc                                                                                       <  2:46261/149‑1 (MQ=255)                                                                  tGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGcc                                                                                  >  4:246013/1‑149 (MQ=255)                                                                   ggcggcTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGccc                                                                                 >  6:219051/1‑149 (MQ=255)                                                                    gcggcTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGccc                                                                                 <  8:1824/148‑1 (MQ=255)                                                                    gcggcTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCg                                                                                <  2:158390/149‑1 (MQ=255)                                                                      ggcTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGga                                                                              <  5:219051/149‑1 (MQ=255)                                                                            cATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGc                                                                        <  3:246013/149‑1 (MQ=255)                                                                            cATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGc                                                                        <  7:69752/149‑1 (MQ=255)                                                                            cATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGACGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAg                                                                         >  1:189587/1‑148 (MQ=255)                                                                                 aGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCAc                                                                   <  2:149187/149‑1 (MQ=255)                                                                                 aGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCAc                                                                   >  5:136753/1‑149 (MQ=255)                                                                                      gTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTaa                                                               <  1:35191/148‑1 (MQ=255)                                                                                       tCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGt                                                                 <  5:124303/145‑1 (MQ=255)                                                                                       tCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGt                                                                 >  6:124303/1‑145 (MQ=255)                                                                                       tCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAgt                                                             <  7:11009/149‑1 (MQ=255)                                                                                       tCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAgt                                                             >  2:134917/1‑149 (MQ=255)                                                                                         cTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAg                                                                         <  2:123958/135‑1 (MQ=255)                                                                                         cTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAg                                                                         >  1:123958/1‑135 (MQ=255)                                                                                            gTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTc                                                          >  8:110835/1‑147 (MQ=255)                                                                                              tGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAgg                                                      >  4:154181/1‑149 (MQ=255)                                                                                                 cACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATggccggtggcaaccaggactacctgtatgccagccgccagatcacgttctatagcgaccagatccgtgatccagatgtaccgcgcatcctcgacaac                                                   <  8:152551‑M2/149‑98 (MQ=255)                                                                                                   tggccgccGCTGGCAGC‑GAGGCCATGCACTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTATTCCGGCAGGTGCGCCTTGAGAAACGCCGCGTCGGCATGCTCGCGCTGGACCGGAGAAAGCATCACGTAAGTCTCCACGgccgc                                                 >  8:106121/8‑148 (MQ=255)                                                                                                     ggCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCt                                               >  3:218217/1‑149 (MQ=255)                                                                                                      gCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCtt                                              >  8:20532/1‑149 (MQ=255)                                                                                                       ccTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATggccggtggcaaccaggactacctgtatgccagccgccagatcacgttctatagcgaccagatccgtga                                                                               >  4:271370‑M2/1‑46 (MQ=255)                                                                                                       ccTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATggccggtggcaaccaggactacctgtatgccagccgccagatcacgttctatagcgaccagatccgtga                                                                               <  3:271370‑M2/115‑70 (MQ=255)                                                                                                        cTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTc                                            <  1:134917/149‑1 (MQ=255)                                                                                                           gCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTcc                                           <  3:154181/147‑1 (MQ=255)                                                                                                                cAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCCGAAATTg                                    >  2:82802/1‑149 (MQ=255)                                                                                                                cAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGACCGCCTTTCCGAAATTg                                    <  7:110835/149‑1 (MQ=255)                                                                                                                             gCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCCGAAATTGGCGATCGACTggg                       >  6:271933/1‑149 (MQ=255)                                                                                                                                ctTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCCGAAATTGGCGATCGACTGGgcgc                    >  3:121706/1‑149 (MQ=255)                                                                                                                                   gCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCCGAAATTGGCGATCGACTGGGCGCgg                  <  7:20532/148‑1 (MQ=255)                                                                                                                                     cGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAAAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCCGAAATTGGCGATCGACTGGGCGCGGTTg               >  1:76503/1‑149 (MQ=255)                                                                                                                                      ggTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCCGAAATTGGCGATCGACTGGGCGCGGTTGt              <  6:136753/149‑1 (MQ=255)                                                                                                                                            gcgggcgATGTCCGGGGACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCTGGTCGTCATGCTCGCGCTGGCCCTGAGAATGGATCACGTAAGTGTCCAGTGCCGCCTTTCCGAAATTGGCGATCGACTGGGCGCGGTTGTCATgg         <  7:106121/148‑1 (MQ=255)                                                                                                                                            gcgggcgATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCCGAAATTGGCGATCGACTGGGCGCGGTTGTCATg          <  5:271933/147‑1 (MQ=255)                                                                                                                                                  gATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGGATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCCGAAATTGGCGATCGACTGGGCGCGGTTGTCATGGGGCAgc   <  4:284832/148‑1 (MQ=255)                                                                                                                                                  gATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCCGAAATTGGCGATCGACTGGGCGCGGTTGTCATGGGGCAgcg  >  3:284956/1‑149 (MQ=255)                                                                                                                                                  gATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCCGAAATTGGCGATCGACTGGGCGCGGTTGTCATGGGGCAgc   >  3:284832/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCCGAAATTGGCGATCGACTGGGCGCGGTTGTCATGGGGCAGCG  >  NC_002947/3479163‑3479456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.