New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3552623	45 (0.920)	4 (0.090)	4/252	NT	8.7%	coding (280/978 nt)	PP_3137	group 2 family glycosyl transferase
	?	NC_002947	= 3552650	41 (0.870)					coding (307/978 nt)	PP_3137	group 2 family glycosyl transferase

TGGCGCTGGACATGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGAGGCCAAGGCCTGTGGCGGCGA  >  NC_002947/3552507‑3552795                                                                                                                                                  |                                                                                                                                                  tGGCGCTGGACATGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGcgcag                                                                                                                                              <  7:84413‑M2/149‑6 (MQ=255)      cTGGACATGAGTATCCCGTTCACCGCCGCACCCGACCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTCGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCAAGCCGCAGGCttt                                                                                                                                         >  7:284445/1‑149 (MQ=255)         gACATGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTATTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCt                                                                                                                                      >  1:215788/1‑149 (MQ=255)             tGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGag                                                                                                                                  <  2:185628/149‑1 (MQ=255)                 tATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGcgcag                                                                                                                                              <  2:6598‑M2/133‑6 (MQ=255)                   tCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCCCGGCGCAGGCTTTTCTTGAGCAGCAc                                                                                                                            >  6:18233/1‑149 (MQ=255)                     ccGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCAccc                                                                                                                          >  8:214107/1‑149 (MQ=255)                      cGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGA‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCAcccc                                                                                                                         >  1:99667/1‑149 (MQ=255)                          cACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGATATGGCCACGGcgc                                                                                                                                                <  1:256542‑M2/123‑4 (MQ=255)                           aCCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGt                                                                                                                    >  6:292249/1‑149 (MQ=255)                               ccgcACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTgg                                                                                                                  >  8:196699/1‑147 (MQ=255)                                  cACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCa                                                                                                                <  6:240576/146‑1 (MQ=255)                                  cACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCa                                                                                                                >  5:240576/1‑146 (MQ=255)                                    cgcgCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAgtggt                                                                                                           <  8:106610/149‑1 (MQ=255)                                            cAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGtt                                                                                                   <  8:84413/149‑2 (MQ=255)                                              attaaGGTTTTGCCGCCTTGCAGCGGCTGTTGCCATCGATGCAGGTTTTTTTTTTTTTCTTTGTCGAGTGCTTGTT‑TTATGTCATCTGGC‑TGGGCTCGGCGCAGGCTTTTTTTGAGCAGCACCCCGCCGTGGCAGTGgtgtg                                                                                                        <  6:270617/139‑1 (MQ=255)                                              aTGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGgtgtg                                                                                                        >  5:270617/1‑142 (MQ=255)                                               tGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGAGGTGTGTCGTCGcc                                                                                                >  8:72060/1‑149 (MQ=255)                                                           cgccTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCt                                                                                    >  2:5524/1‑149 (MQ=255)                                                                    gcgcCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACgg                                                                                                                                                   <  1:114551/77‑1 (MQ=255)                                                                    gcgcCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACgg                                                                                                                                                   >  2:114551/1‑77 (MQ=255)                                                                    gcgcCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGc                                                                           >  6:229552/1‑149 (MQ=255)                                                                        cTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTc                                                                       >  5:217006/1‑149 (MQ=255)                                                                               cATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGGAATGCCAGCTGGC‑TGGCCACGGCGCAGGATTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGATTCCCGCAGCGTTCGGTGTa                                                                 >  1:58124/1‑149 (MQ=255)                                                                               cATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTAc                                                                <  2:215788/149‑1 (MQ=255)                                                                                aTCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTgg                                                                                                                  >  1:106395/1‑98 (MQ=255)                                                                                aTCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTgg                                                                                                                  <  2:106395/98‑1 (MQ=255)                                                                                     tGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTg                                                          <  3:269221/149‑1 (MQ=255)                                                                                       cAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCt                                                        >  1:300599/1‑149 (MQ=255)                                                                                          cTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCtgtg                                                     >  7:15761/1‑149 (MQ=255)                                                                                          cTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCtgtg                                                     <  1:5524/149‑1 (MQ=255)                                                                                               aCAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGAcc                                                >  8:153686/1‑149 (MQ=255)                                                                                                cAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGAcc                                                <  6:217006/148‑1 (MQ=255)                                                                                                cAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCt                                               <  7:196699/149‑1 (MQ=255)                                                                                                 aGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTg                                              >  7:258578/1‑149 (MQ=255)                                                                                                      gtcgATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACt                                                            >  7:24553/1‑130 (MQ=255)                                                                                                      gtcgATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACt                                                            <  8:24553/130‑1 (MQ=255)                                                                                                      gtcgATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGt                                          <  5:34687/148‑1 (MQ=255)                                                                                                           tGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGcgcagtcgccatcgacgaactgtaccagctgcatcgatggcaacaggcgctgcaaggcggcaaaaccttcattgcgggcgcgtgcggcggtgaacgggatactcatgtc                                      <  3:273894‑M2/147‑110 (MQ=255)                                                                                                             gCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATAcc                                  <  7:214107/149‑1 (MQ=255)                                                                                                              cGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGcgcagtcgccatcgacgaactgtaccagctgcatcgatggcaacaggcgctgcaaggcggcaaaaccttcattgcgggcgcgtgcggcg                                                          <  6:207139‑M2/124‑90 (MQ=255)                                                                                                              cGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGcgcagtcgccatcgacgaactgtaccagctgcatcgatggcaacaggcgctgcaaggcggcaaaaccttcattgcgggcgcgtgcggcg                                                          >  5:207139‑M2/1‑35 (MQ=255)                                                                                                                   gCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTCTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCcggtc                            >  7:94718/1‑149 (MQ=255)                                                                                                                    cGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCcggtcg                           <  5:18233/149‑1 (MQ=255)                                                                                                                      aGGT‑GAATGCCAGCTGGC‑TGTCCACTGCGCAGGCTTTTCTTGAGCAGCACCCAGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCcggtcggt                         <  7:72060/149‑1 (MQ=255)                                                                                                                      aGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCATGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCcggtcggt                         >  4:167485/1‑149 (MQ=255)                                                                                                                        gT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGa                       <  8:258578/149‑1 (MQ=255)                                                                                                                        gT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGGGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGa                       <  2:99667/149‑1 (MQ=255)                                                                                                                         t‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGAg                      <  8:15761/149‑1 (MQ=255)                                                                                                                             aTGCCAGCTGGC‑TGGCCACGGcgcagtcgccatcgacgaactgtaccagctgcatcgatggcaacaggcgctgcaaggcggcaaaaccttcattgcgggcgcgtgcggcggtgaacgggatactcatgtccagcgccagtactgccac                    >  4:273894‑M2/1‑21 (MQ=255)                                                                                                                                 cAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGAGGCCAAgg               >  3:30273/1‑149 (MQ=255)                                                                                                                                               aCGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGAGGCCAAGGCCTGTGGCGGCGa  <  8:284445/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  TGGCGCTGGACATGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGT‑GAATGCCAGCTGGC‑TGGCCACGGCGCAGGCTTTTCTTGAGCAGCACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGAGGCCAAGGCCTGTGGCGGCGA  >  NC_002947/3552507‑3552795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.