New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4683397 = | 45 (0.920) | 4 (0.090) | 4/248 | NT | 8.5% | coding (36/1830 nt) | PP_4146 | peptide ABC transporter substrate‑binding protein |
? | NC_002947 | 4683464 = | 43 (0.930) | coding (103/1830 nt) | PP_4146 | peptide ABC transporter substrate‑binding protein |
TACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCACGCCCAATTTCCA > NC_002947/4683317‑4683609 | ccaaaagccatggcccgcaacgtgccgcccttgggcgcttgcgggttgacccagtcgaagtgggtgaaggtggctgggtaCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTa > 2:184718‑M1/81‑149 (MQ=255) tACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTCTCACTCAGCCTGTCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAg > 6:50567/1‑149 (MQ=255) aCTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCTCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGc > 5:253314/1‑149 (MQ=255) cTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGc > 7:264228/1‑148 (MQ=255) ccgcaacgtgccgcccttgggcgcttgcgggttgacccagtcgaagtgggtgaaggtggctgggtaCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTAc < 6:196611‑M1/70‑1 (MQ=255) ccgcaacgtgccgcccttgggcgcttgcgggttgacccagtcgaagtgggtgaaggtggctgggtaCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTAc > 5:196611‑M1/67‑136 (MQ=255) aaCGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACtt > 1:21302/1‑149 (MQ=255) aCGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTc < 7:117311/149‑1 (MQ=255) gATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGt > 1:94647/1‑148 (MQ=255) gATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTc < 3:264636/149‑1 (MQ=255) aTCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTc > 6:254041/1‑148 (MQ=255) tCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCaa < 1:168895/149‑1 (MQ=255) gATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGTCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAAccc < 5:50567/149‑1 (MQ=255) aTGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCg > 6:282076/1‑149 (MQ=255) cGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAg > 7:241816/1‑149 (MQ=255) gATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAgc < 2:21302/149‑1 (MQ=255) tttGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAgcgc > 5:259265/1‑149 (MQ=255) gTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGggc < 8:31412/149‑1 (MQ=255) gTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGggc < 6:259265/149‑1 (MQ=255) gTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCgg < 3:157336/148‑1 (MQ=255) aCTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCCCCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCa > 5:45321/1‑149 (MQ=255) tCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATg > 8:278644/1‑149 (MQ=255) tCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATg > 3:225075/1‑149 (MQ=255) aGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATgg < 2:94647/148‑1 (MQ=255) aGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATg < 3:248607/147‑1 (MQ=255) ccTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCtt < 5:254041/149‑1 (MQ=255) gtacttgagcgtgccgaactgcgcgtatccgtggctttcgctcacgatcgcggctgcgggaaagctcaagTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCgg < 6:196611‑M2/66‑1 (MQ=255) gtacttgagcgtgccgaactgcgcgtatccgtggctttcgctcacgatcgcggctgcgggaaagctcaagTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCgg > 5:196611‑M2/71‑136 (MQ=255) tacttgagcgtgccgaactgcgcgtatccgtggctttcgctcacgatcgcggctgcgggaaagctcaagTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTgg > 2:184718‑M2/70‑149 (MQ=255) gCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTg < 8:264228/148‑1 (MQ=255) gCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTg < 6:253314/148‑1 (MQ=255) gCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTg < 3:34904/148‑1 (MQ=255) CTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACATCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCtttt > 8:134480‑M1/1‑145 (MQ=255) CTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACATCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCtttt < 7:134480‑M1/145‑1 (MQ=255) AGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCtt < 1:183187‑M1/149‑1 (MQ=255) GCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTc > 8:241816‑M1/1‑149 (MQ=255) GCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGACCA‑AGGGCGGCACGTTGCGGGCCCTGGCTTTTGGTACCTTc < 3:48864‑M1/149‑1 (MQ=255) CTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCg < 4:144356‑M1/149‑1 (MQ=255) tttCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCttt > 7:220440/1‑137 (MQ=255) tttCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGa > 1:86717/1‑149 (MQ=255) tttCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTGCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCttt < 8:220440/137‑1 (MQ=255) cccGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGac > 2:152572/1‑147 (MQ=255) cccGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGac < 1:152572/147‑1 (MQ=255) ccGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACg > 8:66568/1‑149 (MQ=255) ccGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACg < 7:278644/149‑1 (MQ=255) gcgtatccgtggctttcgctcacgatcgcggctgcgggaaagctcaagTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAAccc < 1:184718‑M2/101‑1 (MQ=255) gcgATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAAccc > 1:59426/1‑149 (MQ=255) cgATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCATTGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAAccc < 1:230447/149‑1 (MQ=255) gAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCgg > 4:260645/1‑106 (MQ=255) gCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCtt > 6:274495/1‑148 (MQ=255) ggATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAg < 2:183187/149‑1 (MQ=255) cgcgCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGa < 2:59426/149‑1 (MQ=255) cgcAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGAt > 4:177557/1‑148 (MQ=255) gcAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGCGTCGAGCCCGATTa > 7:179878/1‑149 (MQ=255) gTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCa > 7:164291/1‑149 (MQ=255) ttCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCAc > 5:195947/1‑149 (MQ=255) tcaagTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCACGCCCAATTTc > 3:179216‑M2/6‑149 (MQ=255) aagTACCCAGCCACCTTGACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCATCCCCTACACCTTCAAAGGGTCGAGCCCGATTACCACGCCCAATTTCCa < 5:172800‑M2/146‑1 (MQ=255) aagTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTACGACACGCTCAGcc > 2:167438‑M2/4‑103 (MQ=255) | TACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTTTCCCGCAGCCGCGATCGTGAGCGAAAGCCACGGATACGCGCAGTTCGGCACGCTCAAGTACCCAGCCACCTTCACCCACTTCGACTGGGTCAACCCGCAAGCGCCCA‑AGGGCGGCACGTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCACGCCCAATTTCCA > NC_002947/4683317‑4683609 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |