New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4738009	44 (0.900)	7 (0.150)	6/248	NT	14.8%	coding (361/1773 nt)	sdhA	succinate dehydrogenase flavoprotein subunit
	?	NC_002947	= 4738033	39 (0.840)					coding (337/1773 nt)	sdhA	succinate dehydrogenase flavoprotein subunit

CCTGGTACAGGGTGTGCAGCAGCGCGTGACCGGTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATGTAGTCGGAACCCTTGACGGTATCGTACATGTGCCAGCGCCAGTCGTCGTTC  >  NC_002947/4737907‑4738181                                                                                                                               |                                                                                                                                                     ccTGGTACAGGGTGTGCAGCAGCGCGTGACCGGTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACAGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGa                                                                                                                                >  6:230312/1‑149 (MQ=255)           ggTGTGCAGCAGCGCGTGACCGGTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGt                                                                                                                      <  3:175562/149‑1 (MQ=255)            gtgtGCAGCAGCGCGTGACCGGTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTc                                                                                                                     >  7:273475/1‑149 (MQ=255)             tgtgCAGCAGCGCGTGACCGGTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTcc                                                                                                                    <  2:220022/149‑1 (MQ=255)              gtgCAGCAGCGCGTGACCGGTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTc                                                                                                                     >  1:139432/1‑147 (MQ=255)               tgCAGCAGCGCGTGACCGGTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAg                                                                                                                  >  3:98007/1‑149 (MQ=255)                  agcagcGCGTGACCGGTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTgc                                                                                                                                              >  1:6217/1‑118 (MQ=255)                  agcagcGCGTGACCGGTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTgc                                                                                                                                              <  2:6217/118‑1 (MQ=255)                        gcgTGACCGGTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGAc                                                                                                         <  2:300156/149‑1 (MQ=255)                             aCCGGTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCTGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAg                                                                                                    <  5:111635/149‑1 (MQ=255)                             aCCGGTACGGTCGGAAGCGGCACAGGAACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAg                                                                                                    <  1:206931/149‑1 (MQ=255)                                 gTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCAAAGTACTTGGACTGACCAACGAACGGGCGCTGATAGAAGCGGCCGGTTTAGGTGCGCGAGAACGGCAGCCCCATGTTGTACAGTTAGAAGCCCGCCGCCgg                                                                                                >  1:221713/1‑149 (MQ=255)                                          gAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCt                                                                                        >  6:183707/1‑148 (MQ=255)                                          gAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCt                                                                                        >  4:209788/1‑148 (MQ=255)                                           aaGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGa                                                                                      <  3:209788/149‑1 (MQ=255)                                           aaGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGa                                                                                      <  5:183707/149‑1 (MQ=255)                                                 cacaGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATg                                                                                <  7:181661/149‑1 (MQ=255)                                                      gTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTc                                                                           >  5:50955/1‑149 (MQ=255)                                                      gTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTc                                                                           >  2:172619/1‑149 (MQ=255)                                                      gTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTc                                                                           >  3:258931/1‑149 (MQ=255)                                                         cGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGtt                                                                                                                >  6:42175/1‑109 (MQ=255)                                                         cGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGtt                                                                                                                <  5:42175/109‑1 (MQ=255)                                                         cGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGa                                                                         <  7:224116/148‑1 (MQ=255)                                                           ggcggcCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAg                                                                      <  8:273475/149‑1 (MQ=255)                                                                         cTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTc                                                            <  5:102335/145‑1 (MQ=255)                                                                         cTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTc                                                            >  6:102335/1‑145 (MQ=255)                                                                            tACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGTTAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGa                                                       <  4:205224/147‑1 (MQ=255)                                                                             aCCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATg                                                     <  8:130043/148‑1 (MQ=255)                                                                                 aaGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATGTAGTc                                                <  6:50955/149‑1 (MQ=255)                                                                                  aGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATGTAGTCg                                               <  4:98007/149‑1 (MQ=255)                                                                                  aGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATGTAGTCg                                               <  5:230312/149‑1 (MQ=255)                                                                                       ttGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATGTAGTCGGAAcc                                          >  7:267851/1‑149 (MQ=255)                                                                                        tGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGac                                                                                     >  8:205107/1‑105 (MQ=255)                                                                                        tGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGac                                                                                     <  7:205107/105‑1 (MQ=255)                                                                                           aCTGACCACCGAACGGGCGCTGATAGCTGCGGCCGGTttcggtggtcagtccaaggacttcggtaaaggtggccaggccgcccgtacctgtgccgcttccgaccgtaccggtcacgcgctgctgcacaccctgtaccagggcaacctg                                       <  6:252773‑M2/148‑112 (MQ=255)                                                                                              gACCACCGAACGGGCGCTGATAGATGCGGCCGGTttcggtggtcagtccaaggacttcggtaaaggtggccaggccgcccgtacctgtgccgcttccgaccgtaccggtcacgcgctgctgcacaccctgtaccagggcaacctgaagg                                   <  2:165407‑M2/149‑116 (MQ=255)                                                                                              gACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCATGACACATGTATTCGATAGCGTCCTGGTCAc                                                          <  8:158716/126‑1 (MQ=255)                                                                                              gACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCATGACACATGTATTCGATAGCGTCCTGGTCAc                                                          >  7:158716/1‑126 (MQ=255)                                                                                               accaccGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTTCTGGTCACCGATGTAGTCGGAACCCTTGAc                                    <  4:258931/147‑1 (MQ=255)                                                                                               accaccGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATGTAGTCGGAACCCTTGACgg                                  >  6:52802/1‑149 (MQ=255)                                                                                                 caccGAACGGGCGCTGATAGATGCGGCCGGTttcggtggtcagtccaaggacttcggtaaaggtggccaggccgcccgtacctgtgccgcttccgaccgtaccggtcacgcgctgctgcacaccctgtaccagggcaacctgaaggcgg                                <  5:61066‑M2/149‑119 (MQ=255)                                                                                                  accGAACGGGCGCTGATAGATGCGGCCGGTttcggtggtcagtccaaggacttcggtaaaggtggccaggccgcccgtacctgtgccgcttccgaccgtaccggtcacgcgctgctgcacaccctgtaccagggcaacctgaaggcggg                               <  5:251789‑M2/149‑120 (MQ=255)                                                                                                  accGAACGGGCGCTGATAGATGCGGCCG‑tcggtggtcagtccaaggacttcggtaaaggtggccaggccgcccgtacctgtgccgcttccgaccgtaccggtcacgcgctgctgcacaccctgtaccagggcaacccgaaggcgggca                               <  5:127021‑M2/149‑121 (MQ=255)                                                                                                        cGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATGTAGTCGGAACCCTTGACGGTATCGTACa                         <  2:221713/149‑1 (MQ=255)                                                                                                         gggCGCTGATAGATGCGGCCGGTttcggtggtcagtccaaggacttcggtaaaggtggccaggccgcccgtacctgtgccgcttccgaccgtaccggtcacgcgctgctgcacaccctgtaccagggcaacctgaaggcgggcaccacg                        >  6:61066‑M2/1‑23 (MQ=255)                                                                                                               tGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATGTAGTCGGAACCCTTGACGGTATCGTACATGTGc                    >  4:135432/1‑147 (MQ=255)                                                                                                                    gATGCGGCCGGTttcggtggtcagtccaaggacttcggtaaaggtggccaggccgcccgtacctgtgccgcttccgaccgtaccggtcacgcgctgctgcacaccctgtaccagggcaacctgaaggcgggcaccacgttcctcaacg              >  1:165407‑M2/1‑12 (MQ=255)                                                                                                                          gCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATGTAGTCGGAACCCTTGACGGTATCGTACATGTGCCAGCGCCAgtcgt       <  3:135432/149‑1 (MQ=255)                                                                                                                            cGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATGTAGTCGGAACCCTTGACGGTATCGTACATGTGCCAGCGCCAGtcgtcg     >  5:148810/1‑149 (MQ=255)                                                                                                                               tttCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGTTGTAGTCGGAACCCTTGACGATATCGTACATGTGCCAGCGCCAGTCGTCGTTc  >  1:251537/1‑149 (MQ=255)                                                                                                                               tttCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATGTAGTCGGAACCCTTGACGGTATCGTACATGTGCCAGCGCCAGTCGTCGTTc  <  2:139432/149‑1 (MQ=255)                                                                                                                               |                                                                                                                                                     CCTGGTACAGGGTGTGCAGCAGCGCGTGACCGGTACGGTCGGAAGCGGCACAGGTACGGGCGGCCTGGCCACCTTTACCGAAGTCCTTGGACTGACCACCGAACGGGCGCTGATAGATGCGGCCGGTTTCGGTGCGCGAGAACGGCAGACCCATGTGGTCCAGTTCGAAGACCGCAGCCGGGCCTTCCTGACACATGTATTCGATAGCGTCCTGGTCACCGATGTAGTCGGAACCCTTGACGGTATCGTACATGTGCCAGCGCCAGTCGTCGTTC  >  NC_002947/4737907‑4738181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.