New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5327969 =58 (1.190)4 (0.090) 4/248 NT 7.4% coding (370/1038 nt) PP_4688 heme/hemin ABC transporter permease
?NC_002947 5328031 = 45 (0.970)coding (308/1038 nt) PP_4688 heme/hemin ABC transporter permease

CCAGGCGGTAGACCAGCGCAGTTACCCCAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGATCATCTCGGCCTGCTG  >  NC_002947/5327885‑5328173
                                                                                                                                                  |                                                                                                                                                   
ccAGGCGGTAGACCAGCGCAGTTACCCCAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAAcc                                                                                                                                                   >  2:34872/1‑149 (MQ=255)
    gCGGTAGACCAGCGCAGTTACCCCAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑a                                                                                                                                             <  8:41701/149‑1 (MQ=255)
             cAGCGCAGTTACCCCAAGCCCGCCGACAAACGCGCAGACCGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAACCCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCgg                                                                                                                                    >  8:133527/1‑149 (MQ=255)
              aGCGCAGTTACCCCAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCggg                                                                                                                                   <  8:23205/149‑1 (MQ=255)
                cgcAGTTACCCCAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGt                                                                                                                                <  1:34872/149‑1 (MQ=255)
                        ccccAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGc                                                                                                                      <  1:286061/149‑1 (MQ=255)
                        ccccAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGc                                                                                                                      >  8:105143/1‑149 (MQ=255)
                             aGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGtt                                                                                                                 <  5:76191/149‑1 (MQ=255)
                                ccgccgACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCg                                                                                                              <  5:244538/149‑1 (MQ=255)
                                ccgccgACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCg                                                                                                              >  2:259566/1‑149 (MQ=255)
                                 cgccgACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCTGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCgg                                                                                                             <  3:296415/149‑1 (MQ=255)
                                  atgcaggggctgttccgcaacccgctggccgaccccgggctggtaggggtTGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAAc                                                                                                                                                    >  7:231806‑M1/51‑114 (MQ=255)
                                  atgcaggggctgttccgcaacccgctggccgaccccgggctggtaggggtTGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAAc                                                                                                                                                    <  8:231806‑M1/64‑1 (MQ=255)
                                     gACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACa                                                                                                         <  8:94808/149‑1 (MQ=255)
                                     gACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACa                                                                                                         <  7:105143/149‑1 (MQ=255)
                                          aCGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCg                                                                                                                                     >  8:140372/1‑119 (MQ=255)
                                          aCGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCg                                                                                                                                     <  7:140372/119‑1 (MQ=255)
                                           cgcgCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCt                                                                                                   >  3:51850/1‑149 (MQ=255)
                                             cgcAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGc                                                                                                 <  6:250390/149‑1 (MQ=255)
                                             cgcAGAACGACAGCAGATAAGCCTCGAAAGCATCCGGCATGCCGCCAACCCAGGCGCCGCCGACAATGGCAACCGCGGCCCCCACTGCGGCGCCGGCTGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGc                                                                                                 <  5:75615/149‑1 (MQ=255)
                                                aGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATg                                                                                              >  2:250195/1‑149 (MQ=255)
                                                 gAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCACCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATgg                                                                                             <  2:43760/149‑1 (MQ=255)
                                                      aCAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCAcc                                                                                        >  1:93529/1‑149 (MQ=255)
                                                             aTAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑Cg                                                                                                                            <  7:272037/106‑1 (MQ=255)
                                                             aTAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑Cg                                                                                                                            >  8:272037/1‑106 (MQ=255)
                                                             aTAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAg                                                                                                        >  6:18389/1‑126 (MQ=255)
                                                             aTAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAg                                                                                                        <  5:18389/126‑1 (MQ=255)
                                                              tAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACa                                                                                 <  2:93529/148‑1 (MQ=255)
                                                                 ggCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGTGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAgcgc                                                                             <  8:290574/149‑1 (MQ=255)
                                                                 ggCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAgcgc                                                                             <  4:51850/149‑1 (MQ=255)
                                                                       aaaGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCAc                                                                       >  7:224817/1‑149 (MQ=255)
                                                                                  gttgccgccggcgccgcagtgggggcagcggttgccattgtcggcggcgcctggtttggcggcaACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCAt                                                                                               <  8:231806‑M2/50‑1 (MQ=255)
                                                                                  gttgccgccggcgccgcagtgggggcagcggttgccattgtcggcggcgcctggtttggcggcaACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCAt                                                                                               >  7:231806‑M2/65‑114 (MQ=255)
                                                                                      ccgccggcgccgcagtgggggcagcggttgccattgtcggcggcgcctggtttggcggcaACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCaa                                                        >  3:197848‑M2/61‑149 (MQ=255)
                                                                                              ccAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACACCTCAACCAGCCCGGGGCTACCGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAAccc                                                     <  1:250195/149‑1 (MQ=255)
                                                                                              ccAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTCCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCACCCACCGCCACCCCCAACa                                                >  2:263577/1‑149 (MQ=255)
                                                                                               cAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAg                                               >  3:43853/1‑149 (MQ=255)
                                                                                               cAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAg                                               >  3:201189/1‑149 (MQ=255)
                                                                                                aGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAgg                                              >  2:271257/1‑149 (MQ=255)
                                                                                                       gccgACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGcgcg                                       <  1:259566/149‑1 (MQ=255)
                                                                                                          gACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCgg                                      >  1:78475/1‑147 (MQ=255)
                                                                                                            cAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAgg                                  >  1:204547/1‑149 (MQ=255)
                                                                                                               tGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCgg                               <  7:185786/149‑1 (MQ=255)
                                                                                                               tGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCg                                >  3:88205/1‑148 (MQ=255)
                                                                                                                    aCCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCCCCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCt                           >  7:22577/1‑148 (MQ=255)
                                                                                                                     ccGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCAGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGa                         >  3:67412/1‑149 (MQ=255)
                                                                                                                        cTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGAcc                       >  4:34548/1‑148 (MQ=255)
                                                                                                                            ccccACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGa                  >  7:293615/1‑149 (MQ=255)
                                                                                                                            acccACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGa                  >  5:271165/2‑149 (MQ=255)
                                                                                                                             gcggcgcctggtttggcggcaACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGat                 <  4:197848‑M2/128‑1 (MQ=255)
                                                                                                                             cccACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCCCCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGat                 >  6:248939/1‑149 (MQ=255)
                                                                                                                               cACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGatca               <  4:43853/149‑1 (MQ=255)
                                                                                                                                      gcgcCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGATCATCTCGGc        >  2:78975/1‑149 (MQ=255)
                                                                                                                                            gcggcaACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGATCATCTCGGCctgctg  <  2:204547‑M2/143‑1 (MQ=255)
                                                                                                                                              ggcaACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGATCATCTCGGCctgctg  >  4:1543‑M2/5‑147 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
CCAGGCGGTAGACCAGCGCAGTTACCCCAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGGT‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGATCATCTCGGCCTGCTG  >  NC_002947/5327885‑5328173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.