New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5327969 = | 58 (1.190) | 4 (0.090) | 4/248 | NT | 7.4% | coding (370/1038 nt) | PP_4688 | heme/hemin ABC transporter permease |
? | NC_002947 | 5328031 = | 45 (0.970) | coding (308/1038 nt) | PP_4688 | heme/hemin ABC transporter permease |
CCAGGCGGTAGACCAGCGCAGTTACCCCAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGATCATCTCGGCCTGCTG > NC_002947/5327885‑5328173 | ccAGGCGGTAGACCAGCGCAGTTACCCCAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAAcc > 2:34872/1‑149 (MQ=255) gCGGTAGACCAGCGCAGTTACCCCAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑a < 8:41701/149‑1 (MQ=255) cAGCGCAGTTACCCCAAGCCCGCCGACAAACGCGCAGACCGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAACCCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCgg > 8:133527/1‑149 (MQ=255) aGCGCAGTTACCCCAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCggg < 8:23205/149‑1 (MQ=255) cgcAGTTACCCCAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑t < 1:34872/149‑1 (MQ=255) ccccAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGc < 1:286061/149‑1 (MQ=255) ccccAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGc > 8:105143/1‑149 (MQ=255) aGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGtt < 5:76191/149‑1 (MQ=255) ccgccgACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCg < 5:244538/149‑1 (MQ=255) ccgccgACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCg > 2:259566/1‑149 (MQ=255) cgccgACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCTGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCgg < 3:296415/149‑1 (MQ=255) atgcaggggctgttccgcaacccgctggccgaccccgggctggtaggggtTGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAAc > 7:231806‑M1/51‑114 (MQ=255) atgcaggggctgttccgcaacccgctggccgaccccgggctggtaggggtTGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAAc < 8:231806‑M1/64‑1 (MQ=255) gACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACa < 8:94808/149‑1 (MQ=255) gACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACa < 7:105143/149‑1 (MQ=255) aCGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCg > 8:140372/1‑119 (MQ=255) aCGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCg < 7:140372/119‑1 (MQ=255) cgcgCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCt > 3:51850/1‑149 (MQ=255) cgcAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGc < 6:250390/149‑1 (MQ=255) cgcAGAACGACAGCAGATAAGCCTCGAAAGCATCCGGCATGCCGCCAACCCAGGCGCCGCCGACAATGGCAACCGCGGCCCCCACTGCGGCGCCGGCTGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGc < 5:75615/149‑1 (MQ=255) aGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATg > 2:250195/1‑149 (MQ=255) gAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCACCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATgg < 2:43760/149‑1 (MQ=255) aCAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCAcc > 1:93529/1‑149 (MQ=255) aTAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑Cg < 7:272037/106‑1 (MQ=255) aTAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑Cg > 8:272037/1‑106 (MQ=255) aTAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAg > 6:18389/1‑126 (MQ=255) aTAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAg < 5:18389/126‑1 (MQ=255) tAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACa < 2:93529/148‑1 (MQ=255) ggCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGTGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAgcgc < 8:290574/149‑1 (MQ=255) ggCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAgcgc < 4:51850/149‑1 (MQ=255) aaaGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCAc > 7:224817/1‑149 (MQ=255) gttgccgccggcgccgcagtgggggcagcggttgccattgtcggcggcgcctggtttggcggcaACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCAt < 8:231806‑M2/50‑1 (MQ=255) gttgccgccggcgccgcagtgggggcagcggttgccattgtcggcggcgcctggtttggcggcaACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCAt > 7:231806‑M2/65‑114 (MQ=255) ccgccggcgccgcagtgggggcagcggttgccattgtcggcggcgcctggtttggcggcaACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCaa > 3:197848‑M2/61‑149 (MQ=255) ccAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACACCTCAACCAGCCCGGGGCTACCGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAAccc < 1:250195/149‑1 (MQ=255) ccAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTCCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCACCCACCGCCACCCCCAACa > 2:263577/1‑149 (MQ=255) cAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAg > 3:43853/1‑149 (MQ=255) cAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAg > 3:201189/1‑149 (MQ=255) aGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAgg > 2:271257/1‑149 (MQ=255) gccgACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGcgcg < 1:259566/149‑1 (MQ=255) gACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCgg > 1:78475/1‑147 (MQ=255) cAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAgg > 1:204547/1‑149 (MQ=255) tGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCgg < 7:185786/149‑1 (MQ=255) tGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCg > 3:88205/1‑148 (MQ=255) aCCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCCCCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCt > 7:22577/1‑148 (MQ=255) ccGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCAGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGa > 3:67412/1‑149 (MQ=255) cTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGAcc > 4:34548/1‑148 (MQ=255) ccccACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGa > 7:293615/1‑149 (MQ=255) acccACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGa > 5:271165/2‑149 (MQ=255) gcggcgcctggtttggcggcaACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGat < 4:197848‑M2/128‑1 (MQ=255) cccACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCCCCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGat > 6:248939/1‑149 (MQ=255) cACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGatca < 4:43853/149‑1 (MQ=255) gcgcCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGATCATCTCGGc > 2:78975/1‑149 (MQ=255) gcggcaACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGATCATCTCGGCctgctg < 2:204547‑M2/143‑1 (MQ=255) ggcaACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGATCATCTCGGCctgctg > 4:1543‑M2/5‑147 (MQ=255) | CCAGGCGGTAGACCAGCGCAGTTACCCCAAGCCCGCCGACAAACGCGCAGAACGACAGCAGATAAGGCGCGAAAGCATCCGGCATGCCGCCAAACCAGGCGCCGCCGACAATGGCAACCGCTGCCCCCACTGCGGCGCCGGCGGCAACCCCT‑‑ACCAGCCCGGGG‑T‑‑CGGCCAGCGGGTTGCGGAACAGCCCCTGCATGGCCACCCCGGACAGCGCCAGCACCGCGCCCACCGCCAACCCCAACAGGGTGCGCGGCAGGCGGATCTGACCAAGGATCATCTCGGCCTGCTG > NC_002947/5327885‑5328173 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |