Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,768,303 | A→T | 12.5% | L170Q (CTG→CAG) | PP_4218 ← | lipase/esterase family protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,768,303 | 0 | A | T | 12.5% | 143.2 / 11.1 | 56 | L170Q (CTG→CAG) | PP_4218 | lipase/esterase family protein |
Reads supporting (aligned to +/- strand): ref base A (22/27); new base T (2/5); total (24/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.86e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 |
CGCTTCAAGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCACTGCGGCGC > NC_002947/4768161‑4768436 | cgcTTCAAGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTAGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGc < 2:60406/146‑1 (MQ=255) ttCAAGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGATaccac > 3:11914/1‑149 (MQ=255) cAAGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTaccac < 8:124094/147‑1 (MQ=255) aaGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCTGGCTaccattct < 6:150296/149‑5 (MQ=255) aaGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGa < 2:230976/149‑1 (MQ=255) aGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCTGGCTaccattctg < 8:293108/149‑6 (MQ=255) aGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCTGGCTaccattctg < 6:47486/149‑6 (MQ=255) gCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGaca > 8:124900/1‑149 (MQ=255) cggCTTCCATAGCGCTGCACCGAAGGCCGCCTGCAAGTGGCATCGGTCTCCGGGTAGATCATTACCTGCAGTCGCGGTGCCGGCAGCTCGCGATGCGCAGCCAACTTGTTGGCCAGAATGGTAGCCATGCTACCACCGACACTGTCGcc < 4:11914/147‑1 (MQ=255) ccGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCGACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTACCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGcc < 1:270266/149‑1 (MQ=255) cGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCTGGCTaccattct < 8:252835/138‑5 (MQ=255) cGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCTGGCTaccattct > 7:252835/1‑134 (MQ=255) tAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGc < 3:6826/149‑1 (MQ=255) aGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGc < 4:130825/120‑1 (MQ=255) aGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGc > 3:130825/1‑120 (MQ=255) gcgcTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGc > 5:187134/1‑147 (MQ=255) cgcTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAg > 6:26483/1‑149 (MQ=255) tGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCg > 4:179476/1‑149 (MQ=255) ccGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTTGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCccac < 6:144088/133‑1 (MQ=255) ccGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCaccacc > 3:139764/1‑137 (MQ=255) ccGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCaccacc < 4:139764/137‑1 (MQ=255) ccGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTgc < 6:187134/149‑1 (MQ=255) gAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTgcgc < 5:26483/149‑1 (MQ=255) aaGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCt < 2:141447/144‑1 (MQ=255) aaGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCt > 1:141447/1‑144 (MQ=255) aGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCAt < 2:170750/149‑1 (MQ=255) cAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAg < 5:242902/149‑1 (MQ=255) aCTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAgcg < 3:179476/149‑1 (MQ=255) gCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGcc < 1:279124/147‑1 (MQ=255) aTCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGGGCATCGATGCGCAgcga < 4:156389/144‑2 (MQ=255) aTCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGGGCATCGATGCGCAgcga > 3:156389/1‑143 (MQ=255) cGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGa > 3:50910/1‑149 (MQ=255) aTCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACGACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGcccacc > 7:155249/1‑145 (MQ=255) aTTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAgcg < 8:74797/149‑1 (MQ=255) ttACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGaccaac > 5:258397/1‑143 (MQ=255) ttACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGaccaac < 6:258397/143‑1 (MQ=255) cTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAgg > 1:28532/1‑149 (MQ=255) gCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCa > 2:192219/1‑149 (MQ=255) ccGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCg > 2:56893/1‑149 (MQ=255) aGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCa < 4:232579/136‑1 (MQ=255) aGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCa > 3:232579/1‑136 (MQ=255) gCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTg < 4:50910/149‑1 (MQ=255) cTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCg < 4:12887/149‑1 (MQ=255) gcgcAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCgg > 2:281442/1‑148 (MQ=255) cgcAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCggg < 2:28532/148‑1 (MQ=255) cAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGaaa < 1:192219/149‑1 (MQ=255) aaCTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCa > 6:129181/1‑149 (MQ=255) tGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCa > 2:155417/1‑126 (MQ=255) tGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCa < 1:155417/126‑1 (MQ=255) gTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCTGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCACTgcg > 4:267683/1‑149 (MQ=255) ggCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAgg < 5:67119/112‑1 (MQ=255) ggCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAgg > 6:67119/1‑112 (MQ=255) ggCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCACTgcggc < 7:124900/148‑1 (MQ=255) cAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCACTGCGgcgc > 2:281981/1‑147 (MQ=255) cggtGGTAGCCTGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTgg > 3:73434/4‑120 (MQ=255) cggtGGTAGCCTGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTgg < 4:73434/117‑1 (MQ=255) | CGCTTCAAGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCACTGCGGCGC > NC_002947/4768161‑4768436 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |