Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 362,777 T→C 8.7% T236A (ACC→GCC)  lcdH ← L‑carnitine dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947362,7770TC 8.7% 119.8 / 2.0 46T236A (ACC→GCC) lcdHL‑carnitine dehydrogenase
Reads supporting (aligned to +/- strand):  ref base T (19/22);  new base C (2/2);  total (22/24)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01

TTGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCGCCAGAGCGCTTCGAGCAGGCGGTCGGCGATGAAGCC  >  NC_002947/362631‑362921
                                                                                                                                                   |                                                                                                                                                    
ttGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTaa                                                                                                                                                    <  3:66831/149‑1 (MQ=255)
ttGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTaa                                                                                                                                                    <  5:226390/149‑1 (MQ=255)
   cTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCACGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAgg                                                                                                                                                  >  5:34456/1‑148 (MQ=255)
    tCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGaa                                                                                                                                                >  5:180050/1‑149 (MQ=255)
      ggAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAt                                                                                                                                               <  5:103688/148‑1 (MQ=255)
           tGCCGCTCACCACATCGTCGATAAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGCTAAGGAAT‑‑‑‑GTGcc                                                                                                                                      >  3:98293/1‑148 (MQ=255)
                              gATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGc                                                                                                                  >  6:75943/1‑149 (MQ=255)
                              gATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGc                                                                                                                  <  6:189565/149‑1 (MQ=255)
                                        tCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCa                                                                                                          >  2:31855/1‑147 (MQ=255)
                                              aGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAAt                                                                                                  <  1:31855/149‑1 (MQ=255)
                                                  ccGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATcgc                                                                                               <  2:300986/148‑1 (MQ=255)
                                                   cGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGcgt                                                                                             >  4:179483/1‑149 (MQ=255)
                                                    ggTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGcgtc                                                                                            >  2:268162/1‑149 (MQ=255)
                                                         tGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGc                                                                                                                                       <  8:74304/101‑1 (MQ=255)
                                                               gTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAgc                                                                                                                        <  1:94125/110‑1 (MQ=255)
                                                               gTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAgc                                                                                                                        >  2:94125/1‑110 (MQ=255)
                                                                    tCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCgtg                                                                            >  3:285774/1‑149 (MQ=255)
                                                                    tCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGGGGGGTATGGGGGGGAGAAAAAACCCCCAGCGCAACACTGCCCCAAAGAGAATCGCGTCGTCGATTTcccc                                                                                >  1:253660/1‑149 (MQ=255)
                                                                        gggCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGtggtgg                                                                        <  8:257040/149‑1 (MQ=255)
                                                                              cTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGcc                                                                                                           >  6:238533/1‑108 (MQ=255)
                                                                              cTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGcc                                                                                                           <  5:238533/108‑1 (MQ=255)
                                                                                 cAGTGCTGGGCGGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGTGTTTAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCTGCGCAAGCCTGCGCCAAATCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTc                                                                  <  1:82743/146‑1 (MQ=255)
                                                                                  aGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCcgt                                                               <  3:179483/148‑1 (MQ=255)
                                                                                            cGAACTGTGACATGAAGCGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCTACTCCGTCGTTGACCAgg                                                    <  6:34456/149‑1 (MQ=255)
                                                                                             gAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGt                                                   >  4:65275/1‑149 (MQ=255)
                                                                                                          aaGTGGCGGATGCGGGCAT‑CGCCTCCGGCCAGGGTATTGGTAAGGAAT‑‑‑‑GTGCCCATGAACGTGCTGCGCATGCCTGCGCCAAAGCGATTCGCGTCGTCGATTTCGGCCGTGGTGGCAACTCCGTCGTTGACCAGGTGGAAGGCCTcgc                                       <  4:98293/148‑1 (MQ=255)
                                                                                                          aaGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCcgtcgt                                                            >  3:9596/1‑127 (MQ=255)
                                                                                                          aaGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCcgtcgt                                                            <  4:9596/127‑1 (MQ=255)
                                                                                                           ggTGGCG‑ATGCCGGCATGCGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCgcgc                                     >  8:9122/2‑149 (MQ=255)
                                                                                                           aGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCgcgc                                     <  2:253660/149‑1 (MQ=255)
                                                                                                             tGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGCAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCgcgc                                     >  7:140465/1‑147 (MQ=255)
                                                                                                             tGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGCAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCgcgc                                     >  7:140462/1‑147 (MQ=255)
                                                                                                               gcgcATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCGCCaga                                 >  2:79287/1‑149 (MQ=255)
                                                                                                               gcgcATGCCGACAT‑CGCCAAAGCCCAGGGTAAACGTAAGCAAT‑‑‑‑GAACCCATGAACTACCAGCTCAAGCCTGCGCCAAAGCGAATCGAGTCGTCGAATTCGCCCGTGGTCGCAACTACGTCGTTGACCAGGTGAAATGCCTCGCGCCa                                   >  6:293611/1‑147 (MQ=255)
                                                                                                                 gcATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCGCCAGAgc                               <  1:268162/149‑1 (MQ=255)
                                                                                                                      ccGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGtt                                                           >  3:90517/1‑116 (MQ=255)
                                                                                                                      ccGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGtt                                                           <  4:90517/116‑1 (MQ=255)
                                                                                                                       cGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCGCCAGAGCGCTTc                          >  6:119350/1‑148 (MQ=255)
                                                                                                                              cGCCACCGGCCAGGGTATAGGCAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCGCCAGAGCGCTTCGAGCAgg                   <  8:140462/149‑1 (MQ=255)
                                                                                                                               gCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGGAAGGCCTCGCGCCAGAGCGCTTCGAGCatg                   <  1:52880/148‑3 (MQ=255)
                                                                                                                               gCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCGCCAGAGCGCTTCGAGCAGGc                  >  1:9420/1‑149 (MQ=255)
                                                                                                                               gCCACCGGCCAGGGTATAGGCAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCTCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCGCCAGAGCGCTTCGAGCAgg                   <  8:140465/148‑1 (MQ=255)
                                                                                                                                      gCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCGCCAGAGCGCTTCGAGCAGGCGGTCGGc           <  3:65275/149‑1 (MQ=255)
                                                                                                                                             tataGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCGCCAGAGCGCTTCGAGCAGGCGGTCGGCGATGAAg    >  3:20006/1‑149 (MQ=255)
                                                                                                                                               taGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCGCCAGAGCGCTTCGAGCAGGCGGTCGGCGATGAAGcc  <  5:75943/149‑1 (MQ=255)
                                                                                                                                               taGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCGCCAGAGCGCTTCGAGCAGGCGGTCGGCGATGAAGc   <  4:20006/148‑1 (MQ=255)
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TTGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGCTTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAT‑‑‑‑GTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCGCCAGAGCGCTTCGAGCAGGCGGTCGGCGATGAAGCC  >  NC_002947/362631‑362921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑