| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,936,626 | G→C | 7.7% | intergenic (‑37/‑381) | flhA ← / → PP_4345 | flagellar export pore protein/GntR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,936,626 | 0 | G | C | 7.7% | 233.6 / 8.4 | 78 | intergenic (‑37/‑381) | flhA/PP_4345 | flagellar export pore protein/GntR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (37/35); new base C (3/3); total (40/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.56e-01 | |||||||||||
TCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGCC > NC_002947/4936487‑4936771 | tcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTgg < 7:224059/149‑1 (MQ=35) catTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTggg > 1:62119/1‑149 (MQ=35) atTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGCGCC‑CCCTGGGc < 5:273520/149‑1 (MQ=255) ttGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGc < 4:231382/148‑1 (MQ=37) gCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTg > 6:3959/1‑149 (MQ=39) ccAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTgg > 8:187393/1‑149 (MQ=40) ccAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGCGCC‑CCCTGGGCGtca < 3:114870/149‑3 (MQ=255) aCATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCCGGGGGC‑GCCTGGGCGTGGCtt > 5:308128/1‑149 (MQ=255) aCATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCtt > 2:99594/1‑149 (MQ=255) aTCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTg < 2:204395/149‑1 (MQ=255) tCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CTGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGc < 5:39194/149‑1 (MQ=255) tCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGc < 2:66135/149‑1 (MQ=255) tCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGCGCC‑CCCTGGGc > 4:225875/1‑139 (MQ=255) tCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGCGCC‑CCCTGGGc < 3:225875/139‑1 (MQ=255) cACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCa < 7:69769/149‑1 (MQ=255) gcagcagcaGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCaagaag > 3:229571/1‑149 (MQ=255) cagcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGc < 3:165365/149‑1 (MQ=255) gcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGACTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCtt < 1:99594/149‑1 (MQ=255) aCAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCACAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTc > 1:53825/1‑149 (MQ=255) aCAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTc > 7:260280/1‑148 (MQ=255) aCAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTc > 8:180122/1‑148 (MQ=255) gCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACttt < 7:153114/149‑1 (MQ=255) cACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTg < 5:231303/149‑1 (MQ=255) ccccAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg > 5:108825/1‑147 (MQ=255) ccccAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCa < 5:3959/149‑1 (MQ=255) ccccAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTCCCAACTTTgg > 5:111824/1‑147 (MQ=255) cccAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg > 8:30307/1‑146 (MQ=255) cccAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAg > 7:277401/1‑149 (MQ=255) aGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGaca < 4:229571/149‑1 (MQ=255) gCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCca > 7:65268/1‑148 (MQ=255) cccGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTACTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCacac > 1:39581/1‑149 (MQ=255) ccGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTgg > 4:120821/1‑109 (MQ=38) ccGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTgg < 3:120821/109‑1 (MQ=38) ccGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGaaaa < 2:53825/149‑1 (MQ=255) cGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAg < 2:62119/149‑1 (MQ=255) gAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGCTCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCGAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGa < 6:54767/149‑1 (MQ=255) gAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGa < 7:2037/149‑1 (MQ=255) gAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTCCCAACTTTGGCAGACACCCACACGAAAAGa < 6:111824/149‑1 (MQ=255) gttgCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGca > 6:14212/1‑149 (MQ=255) gCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGcacca > 8:6784/1‑149 (MQ=255) gCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGcacca > 5:25034/1‑149 (MQ=255) cTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGa < 3:63503/148‑1 (MQ=255) aTTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGTCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCCTTGAAggc > 7:113356/1‑148 (MQ=255) aCTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGc > 1:237513/1‑149 (MQ=255) aGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCAt < 7:180122/149‑1 (MQ=255) aTCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGagcaa < 7:187393/149‑1 (MQ=255) ccACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGagcaag > 1:62967/1‑149 (MQ=255) aCCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAgcaagcaa > 3:133716/1‑149 (MQ=255) aCCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAgcaagcaa < 7:6784/149‑1 (MQ=255) ccGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAAt < 5:14212/149‑1 (MQ=255) gcgAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCa < 7:30307/149‑1 (MQ=255) aGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCa < 4:133716/149‑1 (MQ=255) aGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGATTTGCAAGAAGCTTTCCAAATTTGGCAGACACCCACACGAAAAGATGA‑GCCGGG‑CGAGCACCCCCGCGTTGACGGGTGGCTCATGAGCAAGCAATcccc > 7:47321/1‑148 (MQ=38) gTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCaa < 6:108825/149‑1 (MQ=255) tCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAg < 6:25034/149‑1 (MQ=255) tGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAAc > 5:177060/1‑149 (MQ=255) gATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAAc < 6:177060/148‑1 (MQ=255) tGCAAAACGTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACgag < 6:308128/149‑1 (MQ=255) gtaaaaGTTTGAAGCGCAGGGGTC‑GCCTTGGCGTGGCTTTTCAAGAAGCTTTCCAACTTTGGCAGACACCCACACTTAAAGATGA‑AACGGG‑CGAGCAGCACCGCGTTGACGGGTGGATCATTAGCAAGCAATCACCTAGAAAATCgag < 8:260280/146‑1 (MQ=255) cAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCcac > 2:235329/1‑72 (MQ=255) aaaaCTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTc > 3:108395/1‑117 (MQ=255) aaaaCTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTc < 4:108395/117‑1 (MQ=255) aaaaCTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGAcc > 2:222214/1‑149 (MQ=255) aaaCTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTAGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTAATGAGCAAGCAATCACCAAGAAAAAAGAGAcat > 4:36678/1‑147 (MQ=255) cTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTccc > 7:177742/1‑149 (MQ=255) ttGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCCTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGc > 8:111873/1‑149 (MQ=255) tGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGcc > 7:77146/1‑149 (MQ=255) gACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGcc < 2:237513/148‑1 (MQ=255) caCGCCCAGGCGCC‑CCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATAACCAAGAAAAACGAGCCCTCCCGcc > 2:287487/2‑148 (MQ=255) aCGCCCAGGCGCC‑CCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGccc > 2:63739/1‑148 (MQ=255) cGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCaa > 7:126899/1‑149 (MQ=255) gCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGCCACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAAt > 3:81005/1‑149 (MQ=255) gCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAAt > 6:221637/1‑149 (MQ=255) cccAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATc < 8:65268/149‑1 (MQ=255) ccAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGATGTCGGGCCGCCCACCCCCGGGTT‑ACCGGTGGCTCATTAGCAAACGATAACCAAAAAAAACGAGACCACccccccca > 1:95693/1‑145 (MQ=255) ccAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGc > 7:211243/1‑142 (MQ=255) ccAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGc < 8:211243/142‑1 (MQ=255) aGGGGGC‑GCCTGGGCGTGGGTTTGCAAGAAGCTTTACAAGTTTGGCAGCCACCCACACGAAAAGATGA‑ACCGGG‑CGAGCTCCACCGCGTTGACGGGTGTCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGcc < 8:113356/149‑1 (MQ=255) | TCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGC‑CAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGC‑GCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGA‑ACCGGG‑CGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGCC > NC_002947/4936487‑4936771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |