Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,182,059 G→T 12.5% intergenic (‑117/+37) PP_4560 ← / ← csbD ribonuclease BN/stress response protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,182,0590GT12.5% 123.4 / 9.8 48intergenic (‑117/+37)PP_4560/csbDribonuclease BN/stress response protein
Reads supporting (aligned to +/- strand):  ref base G (25/17);  new base T (4/2);  total (29/19)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.62e-01

AAGCCGCGCAGGTCGGGGAAAATCATAGCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGC  >  NC_002947/5181917‑5182205
                                                                                                                                              |                                                                                                                                                   
aaGCCGCGCAGGTCGGGGAAAATCATAGCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGtt                                                                                                                                               <  4:292013/149‑1 (MQ=255)
   ccGCGCAGGTCGGGGAAAATCATAGCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCAc                                                                                                                                            >  5:206288/1‑149 (MQ=255)
        cAGGTCGGGGAAAATCATAGCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCgag                                                                                                                                       <  3:252080/149‑1 (MQ=255)
         aGGTCGGGGAAAATCATAGCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCgag                                                                                                                                       >  8:213595/1‑148 (MQ=255)
          ggTCGGGGAAAATCATAGCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCTCGGGTGAACCCgcg                                                                                                                                       >  5:257882/1‑145 (MQ=255)
          ggTCGGGGAAAATCATAGCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCTCGGGTGAACCCGcgaa                                                                                                                                     <  6:257882/149‑1 (MQ=255)
           gTCGGGGAAAATCATAGCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCgag                                                                                                                                       >  1:80402/1‑146 (MQ=255)
           gTCGGGGAAAATCATAGCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGagaag                                                                                                                                    <  4:226082/149‑1 (MQ=255)
               gggAAAATCATAGCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGc                                                                                                                                >  1:283619/1‑149 (MQ=255)
               gggAAAATCATAGCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGc                                                                                                                                <  6:206288/149‑1 (MQ=255)
                           gCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCt                                                                                                                     >  2:49747/1‑148 (MQ=255)
                              tctcCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCt                                                                                                                     >  8:87759/1‑145 (MQ=255)
                              tctcCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCt                                                                                                                     <  7:87759/145‑1 (MQ=255)
                                   tttCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCtcaagtcaag                                                                                                            >  8:170040/1‑149 (MQ=255)
                                        ccgcTTGATCGCTACACCGGCAAGTCTAATACACCGTCCCCTAGCTGGGCTGCTCCCGGCCGTGGTTGAAGAATTTCCTTACTAATAAGTCCCGGCCTCTCCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGcttc                                                                                                       <  6:281503/149‑1 (MQ=255)
                                                      cacaGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCACGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCAAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCt                                                                                          >  5:248838/1‑148 (MQ=255)
                                                         aGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGTTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTca                                                                                       >  2:13134/1‑148 (MQ=255)
                                                           gCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCGGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACAt                                                                                    >  7:245556/1‑149 (MQ=255)
                                                           gCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCACGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTATTCGCGGGTTAACCCGAGAAGAGGCCGGAACCGCATCAAGTCAAGGCTTATTCACCGAATCCTTCACAt                                                                                    >  7:194036/1‑149 (MQ=255)
                                                                tCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑c                                                                                >  6:295787/1‑147 (MQ=255)
                                                                tCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑c                                                                                <  5:295787/147‑1 (MQ=255)
                                                                      aGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAgg                                                                                                           >  5:245060/1‑115 (MQ=255)
                                                                            tGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACGGCATCCTTCACATTT‑CCCTTGACCtgctgc                                                                  >  4:67745/1‑149 (MQ=255)
                                                                                cGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGcgcct                                                              <  2:80402/149‑1 (MQ=255)
                                                                                  aGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGcgcctcg                                                            >  7:1922/1‑149 (MQ=255)
                                                                                        gctgctCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCttt                                                       >  4:291465/1‑148 (MQ=255)
                                                                                          tgctCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGAGCCTCGCCttt                                                       >  7:52746/1‑146 (MQ=255)
                                                                                               ccGGCCGTGTTTTATTAATTTGCTTACTATAAAGTGCCGGCCTCTTCGCGGGTTCACCTGAGAAGCGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCt                                               <  8:245556/149‑1 (MQ=255)
                                                                                               ccGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGAGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTc                                                 >  5:36962/1‑147 (MQ=255)
                                                                                               ccGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGAGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTc                                                 <  6:36962/147‑1 (MQ=255)
                                                                                                cGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCATCAAGTCAAGGCTTCTTCACCGCCTGCTTCACATTT‑GCCGTGGCGTGCTGGGCCTAGCCTGGGAGCTCCTg                                              >  8:231129/1‑149 (MQ=255)
                                                                                                   ccGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTgcgc                                           >  4:131735/1‑149 (MQ=255)
                                                                                                    cGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCgcc                                          <  3:131735/149‑1 (MQ=255)
                                                                                                     gTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTTCCCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCgcc                                          <  1:49747/149‑1 (MQ=255)
                                                                                                          tGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCgccttgcct                                    >  4:122938/1‑149 (MQ=255)
                                                                                                            aagaaTTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCAAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCgccttgcctt                                   <  6:248838/148‑1 (MQ=255)
                                                                                                            aagaaTTTGCTTACGAATAAGTGCCGGCCGCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTc                                  <  7:213595/149‑1 (MQ=255)
                                                                                                                       tACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCt                       >  7:39143/1‑149 (MQ=255)
                                                                                                                          gAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCtttt                    >  6:5825/1‑149 (MQ=255)
                                                                                                                            aTAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCg                  <  7:170040/149‑1 (MQ=255)
                                                                                                                                   ccGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCg            <  2:87140/148‑1 (MQ=255)
                                                                                                                                   ccGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCg            <  3:122938/148‑1 (MQ=255)
                                                                                                                                     ggCCTCTTCTCGGGTGAACCCGCGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGt          >  8:221862/1‑148 (MQ=255)
                                                                                                                                       ccTCTTCTCGGGTGAACCCGCGAAGAGGCCGGCACCGCCTCAAGTCAAGGGTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCAc       >  5:44457/1‑149 (MQ=39)
                                                                                                                                        ctctTCTCGGGTGAACCCGCGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGcgcctcgc                                                           >  8:19910/1‑96 (MQ=38)
                                                                                                                                        ctctTCTCGGGTGAACCCGCGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGcgcctcgc                                                           <  7:19910/96‑1 (MQ=38)
                                                                                                                                          ctTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCtt    >  2:110847/1‑149 (MQ=255)
                                                                                                                                          ctTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCtt    >  1:300876/1‑149 (MQ=255)
                                                                                                                                             cgcgGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGc  <  5:5825/148‑1 (MQ=255)
                                                                                                                                             cgcgGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGc  <  1:13134/148‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                                   
AAGCCGCGCAGGTCGGGGAAAATCATAGCGTCTCCTTTCGCCGCTTGATCGTTACACAGGCAAGTCTAATAGACCGTGCCCGAGCTGTGCTGCTCCCGGCCGTGGTTGAAGAATTTGCTTACGAATAAGTGCCGGCCTCTTCGCGGGTTCACCCGAGAAGAGGCCGGCACCGCCTCAAGTCAAGGCTTCTTCACCGCATCCTTCACATTT‑CCCTTGACCTGCTGCGCCTCGCCTTTGAGCTCCTGCGCCTTGCCTTCGGCCCGCAGCTTTTCGTTGTCGGTCACCTTGC  >  NC_002947/5181917‑5182205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑