| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 401,802 | T→G | 5.9% | intergenic (+329/+100) | PP_0334 → / ← PP_0335 | transposase/glutathione S‑transferase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 401,802 | 0 | T | G | 5.9% | 210.8 / 3.6 | 68 | intergenic (+329/+100) | PP_0334/PP_0335 | transposase/glutathione S‑transferase family protein |
| Reads supporting (aligned to +/- strand): ref base T (33/31); new base G (2/2); total (35/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 | |||||||||||
CCTGATACATAGATGCAACCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGATGGCCGCTTGA > NC_002947/401657‑401942 | ccTGATACATAGATGCAACCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCg < 8:107843/149‑1 (MQ=255) aTACATAGATGCAACCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCg < 3:165763/148‑1 (MQ=255) aTAGATGCAACCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAAAACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGgtgt > 6:246385/1‑148 (MQ=255) tAGATGCAACCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGGGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTc > 1:72854/1‑149 (MQ=255) aaCCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCa > 5:230704/1‑149 (MQ=255) aaCCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGACA‑‑CCGGCGAAGCCGgtgcct > 3:285946/1‑139 (MQ=38) aaCCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGACA‑‑CCGGCGAAGCCGgtgcct < 4:285946/142‑4 (MQ=38) aCCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCGAAGCCGgt < 6:148112/137‑1 (MQ=255) aCCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCGAAGCCGgt > 5:148112/1‑137 (MQ=255) cGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGc < 6:178741/149‑1 (MQ=255) cTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTcc > 1:24756/1‑149 (MQ=255) tATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTcc > 2:12991/1‑148 (MQ=255) ttCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGTGCACGCCCGCTACCaaa > 8:209597/1‑148 (MQ=255) aaaaaaGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGcc > 4:18049/1‑149 (MQ=255) aaaaaaGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGcc < 1:51652/149‑1 (MQ=255) aaaaGCAGCTAGACAGTGTGGGCGAGTCAATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTAGCGGGCACGCCCGCTCCCAAAAGCcca > 1:154633/1‑149 (MQ=255) aaaGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCccac < 2:24756/149‑1 (MQ=255) tAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGgtg > 7:181704/1‑110 (MQ=255) tAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGgtg < 8:181704/110‑1 (MQ=255) tAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGa > 1:250465/1‑147 (MQ=255) aCAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACcaca < 8:228143/142‑1 (MQ=255) aCAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGagatag > 7:228143/1‑144 (MQ=255) ggCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACtgt < 6:101418/149‑1 (MQ=255) gTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCg < 5:31196/91‑1 (MQ=255) gTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCg > 6:31196/1‑91 (MQ=255) cttaGACAGTGTGGGCGTGTCGATACATAGGTGCGGGCTTGCCCTCGAACAGAGATAATGGGGTGTCAGGCA‑‑GCGGCTTCGCCGGTGTTCGCTGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCTTACACTGTGGAAAACCTTg < 2:233908/146‑1 (MQ=38) cataGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTg < 2:250465/148‑1 (MQ=255) cataGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGt < 6:230704/149‑1 (MQ=255) ataGACAGTGTGGGCGAGTCCAAACATAGGACCGCGCTTCCCCCCGAACACACATAATGGCGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGCGCACGCCCGCTCCCAAAAGCCCACCGCAGAAAGCGAACACTGTGGAAAACCtag > 7:179632/1‑145 (MQ=38) taGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAg < 2:72854/149‑1 (MQ=255) gACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAg > 8:33285/1‑147 (MQ=255) aCAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAg > 4:43091/1‑149 (MQ=255) tgtgGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCAGGGCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCg > 1:246386/1‑149 (MQ=255) gCGAGTACATACATAGGAGGGGGCTTGCGCGGGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACAGTGTGGAAAACCTTGTAGGAGCGGGT‑TTAc < 8:179632/149‑1 (MQ=39) aGTCCATACATAGGAGCGGGCTTGCCCGCGAACACAAATAATGTGATGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGTCACGCCCGCTCCCAAAAGCCCACCACAGATAGGGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCcg < 5:246385/149‑1 (MQ=39) atacataGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGt > 5:207906/1‑127 (MQ=255) atacataGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGt < 6:207906/127‑1 (MQ=255) atacataGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAg < 1:12991/149‑1 (MQ=255) acataGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAggg > 3:92052/1‑149 (MQ=255) cataGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTAccc > 5:4102/1‑140 (MQ=255) cataGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTAccc < 6:4102/140‑1 (MQ=255) gAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCt > 6:301850/1‑148 (MQ=255) gggCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGc < 3:18049/149‑1 (MQ=255) gCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCa > 2:227003/1‑149 (MQ=255) gCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCa > 1:47114/1‑149 (MQ=255) gCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCa < 2:47114/149‑1 (MQ=255) ttGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACt > 1:244851/1‑149 (MQ=255) gCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTg < 2:246386/148‑1 (MQ=255) gCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTg < 5:301850/148‑1 (MQ=255) ccccGCGAACACACATATTGGGGTGTCAGGCA‑‑CGGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGGGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACt < 2:154633/146‑1 (MQ=255) acaTAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACtgtg < 6:221083/86‑1 (MQ=255) acaTAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACtgtg > 5:221083/1‑86 (MQ=255) acaTAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGAc < 2:244851/149‑1 (MQ=255) aTAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAggg < 7:49664/119‑1 (MQ=255) aTAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAggg > 8:49664/1‑119 (MQ=255) aaTGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATc > 8:274701/1‑149 (MQ=255) ggggTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGAt > 5:163572/1‑149 (MQ=255) ggggTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGAt > 3:78942/1‑149 (MQ=255) gggTGTCTGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGTCTTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGAt < 1:227003/149‑1 (MQ=255) gggTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGATg < 3:43091/149‑1 (MQ=255) tCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGATGGCCGc < 7:33285/149‑1 (MQ=255) aGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGATCGCCGCtt > 1:191748/1‑149 (MQ=255) aGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCAAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGATGGCCGCtt > 4:69226/1‑149 (MQ=255) gCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGATGGCCGCTTGa > 5:153068/1‑149 (MQ=255) gCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGAGAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCAGCGATGGCCGCTTgc > 5:116425/1‑148 (MQ=255) cA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGa < 4:45197/130‑1 (MQ=255) cA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGa > 3:45197/1‑130 (MQ=255) ccGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAg < 6:159775/109‑1 (MQ=255) ttCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGAc < 6:56452/124‑1 (MQ=255) ttCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGAc > 5:56452/1‑124 (MQ=255) | CCTGATACATAGATGCAACCGGGTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCA‑‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCAAAAGCCCACCACAGATAGCGAACACTGTGGAAAACCTTGTAGGAGCGGGT‑TTACCCGCGAAGGGGCCCTCAGGCCACTGGCGCTGTAGCGACCATCGATGGCCGCTTGA > NC_002947/401657‑401942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |