| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,390,097 | T→A | 8.7% | intergenic (+186/‑536) | PP_4738 → / → PP_mr56 | hypothetical protein/C4 ncRNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,390,097 | 0 | T | A | 8.7% | 232.3 / 9.8 | 80 | intergenic (+186/‑536) | PP_4738/PP_mr56 | hypothetical protein/C4 ncRNA |
| Reads supporting (aligned to +/- strand): ref base T (29/44); new base A (2/5); total (31/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01 | |||||||||||
CCGCGCAATGGCGTATACTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAGGGGATGCCTGTAAACCCGAACTGATTGTCATACAGAAC > NC_002947/5389950‑5390240 | ccGCGCAATGGCGTATACTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACttt > 3:200801/1‑149 (MQ=255)ccGCGCAATGGCGTATACTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACttt > 2:235174/1‑149 (MQ=255) gcgcAATGGCGTATACTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTta < 2:224606/149‑1 (MQ=255) gcgcAATGGCGTATACTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTta > 2:135712/1‑149 (MQ=255) gcAATGGCGTATACTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTtata < 7:80805/149‑1 (MQ=255) gcAATGGCGTATACTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTAGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTtata < 1:223902/149‑1 (MQ=255) gTATACTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCaa < 8:291388/149‑1 (MQ=255) tataCTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAAt < 8:186723/149‑1 (MQ=255) tataCTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTATAAAAGTTGcaaca < 3:147935/149‑5 (MQ=255) tataCTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTATAAAAGTTGcaaca < 4:129430/149‑5 (MQ=255) taCTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGa < 1:190830/149‑1 (MQ=255) taCTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGa < 1:264947/149‑1 (MQ=255) taCTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGa < 7:120907/149‑1 (MQ=255) taCTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTATAAAAGTTGcaacag < 2:50769/148‑6 (MQ=255) aCTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTTCACATTTTATAGTTGCAAATg > 4:194287/1‑147 (MQ=255) tCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACg > 6:147785/1‑148 (MQ=255) tCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACg > 7:11706/1‑148 (MQ=255) tCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACg > 1:124722/1‑148 (MQ=255) ggtatcACTTACCGTAAGGTGCGGTAGCGTAACGCTATCGTGGTGCCGATTATTATTCGAAGCCGGTAGCGAAACTCTAGGTGCATGCCTAGTTGGTAAAAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACTaa < 5:271109/144‑1 (MQ=255) tctcACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAAc > 6:282971/1‑149 (MQ=255) tcACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTATGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTa > 4:11391/1‑149 (MQ=255) tcACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTa > 7:237358/1‑149 (MQ=255) cGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACgg > 3:223323/1‑149 (MQ=255) cGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGcgcg > 5:126037/1‑148 (MQ=255) cGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGcgcg > 8:122988/1‑148 (MQ=255) cGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTATAAAAGTTGcaa > 2:156471/1‑126 (MQ=255) cGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTATAAAAGTTGcaa < 1:156471/128‑3 (MQ=255) gTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGa > 4:180204/1‑149 (MQ=255) tAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAg > 1:130344/1‑149 (MQ=255) aGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACttt > 8:5353/1‑113 (MQ=255) aGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACttt < 7:5353/113‑1 (MQ=255) aGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTa < 5:47111/149‑1 (MQ=255) gTGCGGTAGCGTAACGCTAGCGTGCGTCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTAATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACa < 8:293022/149‑1 (MQ=255) gCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGa > 6:250836/1‑124 (MQ=255) gCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGa < 5:250836/124‑1 (MQ=255) cGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAgc > 8:56273/1‑149 (MQ=255) ggTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAgct > 6:79902/1‑149 (MQ=255) tAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAgctgg < 6:126037/149‑1 (MQ=255) gCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAgctggct < 2:124722/149‑1 (MQ=255) cGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCACGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAgctggctg > 6:245495/1‑149 (MQ=255) aCGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGt > 2:64779/1‑148 (MQ=255) aCGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGt < 5:282971/148‑1 (MQ=255) gCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAg < 3:180204/149‑1 (MQ=255) gCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAg < 6:239743/149‑1 (MQ=255) gCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCACGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAg < 5:245495/149‑1 (MQ=255) gCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGAAAGCAg < 7:122988/148‑1 (MQ=255) gCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTAAAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCa < 1:235174/147‑1 (MQ=255) cGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTc < 2:190384/149‑1 (MQ=255) cGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTc < 1:135712/149‑1 (MQ=255) gggCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCctc < 1:64779/148‑1 (MQ=255) ggCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCtt > 6:196090/1‑149 (MQ=255) ggCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCtt > 6:200516/1‑149 (MQ=255) gCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGGCCGCtt > 8:293101/1‑148 (MQ=255) ccGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGa < 4:223323/149‑1 (MQ=255) ccGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGa < 1:177019/149‑1 (MQ=255) cGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCa > 2:72483/1‑138 (MQ=255) cGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCa < 1:72483/138‑1 (MQ=255) ttAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAg > 1:270913/1‑114 (MQ=255) gATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGt < 2:279399/111‑1 (MQ=255) gATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGt > 1:279399/1‑111 (MQ=255) aTTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCt > 6:43282/1‑149 (MQ=255) ttCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCtt < 3:11391/149‑1 (MQ=255) gACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTg < 3:194287/149‑1 (MQ=255) aCGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTgg < 5:43282/149‑1 (MQ=255) gTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCtt < 4:200801/149‑1 (MQ=255) tAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTc < 8:237358/149‑1 (MQ=255) aCTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCa < 1:2243/149‑1 (MQ=255) gCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGc < 1:280722/136‑1 (MQ=255) gCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGc > 2:280722/1‑136 (MQ=255) tGCCGAGTTGTTAACAGAACTCGTAAATCCACTGTTGCATCTTTTATAGTTGCCTATGACGAAAACTTCGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGAGCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAgg < 7:293101/149‑1 (MQ=255) tGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAgg > 3:296753/1‑149 (MQ=255) cGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACaa > 3:214041/1‑80 (MQ=255) cGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACaa < 4:214041/80‑1 (MQ=255) ggTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCct < 4:154361/95‑1 (MQ=255) cAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAGGGGATGCCTGTAAAc < 5:147785/149‑1 (MQ=255) cAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAGGGGATGCCTGTAAAc < 8:11706/149‑1 (MQ=255) cTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAGGGGATGCCTGTAAACCCGaa < 5:196090/149‑1 (MQ=255) cTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAGGGGATGCCTGTAAACCCGaa < 5:200516/149‑1 (MQ=255) aCTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAg < 8:269047/118‑1 (MQ=255) aCTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAg > 7:269047/1‑118 (MQ=255) cattggCAACTATAAAAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAGGGGATGCCTGTAAACCCGa < 5:48525/131‑1 (MQ=255) cattggCAACTATAAAAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAGGGGATGCCTGTAAACCCGa > 6:48525/6‑136 (MQ=255) cAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGTAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAGGGGATGCCTGTAAACCCGAACTGATTGTCATACAGAAc < 5:79902/149‑1 (MQ=255) cAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAGGGGATGCCTGTAAACCCGAACTGATTGTCATACAGaa < 7:56273/148‑1 (MQ=255) | CCGCGCAATGGCGTATACTCCGTCTCACGTACCGTAAGGTGCGGTAGCGTAACGCTAGCGTGGGGCCGATTAGGATTCGACGCCGGTAGCGAAACTCTAGGTGCATGCCGAGTTGGTAACAGAACTCGTAAATCCACTGTTGCAACTTTTATAGTTGCCAATGACGAAAACTACGGCGCGGAGTACAAGCTGGCTGCGTAAGCAGTCCTCTTGACCCGTTGCTTCTGGTAGCTTCGGCTCCAGCAATCACTAGGGGATGCCTGTAAACCCGAACTGATTGTCATACAGAAC > NC_002947/5389950‑5390240 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |