Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 402,069 | G→T | 10.2% | L153M (CTG→ATG) ‡ | PP_0335 ← | glutathione S‑transferase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 402,069 | 0 | G | T | 10.2% | 140.4 / 7.1 | 49 | L153M (CTG→ATG) ‡ | PP_0335 | glutathione S‑transferase family protein |
Reads supporting (aligned to +/- strand): ref base G (21/23); new base T (2/3); total (23/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.23e-01 |
CGACCATCGATGGCCGCTTGACCACCTCGGCATACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATACCGGCTCGACACTGCCGCATCCATGATC > NC_002947/401922‑402208 | cGACCATCGATGGCCGCTTGACCACCTCGGCATACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGc < 7:170431/149‑1 (MQ=255) aTCGATGGCCGCTTGACCACCTCGGCATACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCgg < 5:235690/149‑1 (MQ=255) gATGGCCGCTTGACCACCTCGGCATACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGCTGATCTCCGGctt < 2:289747/149‑3 (MQ=255) gATGGCCGCTTGACCACCTCGGCATACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGCTGATCTCCGGct < 6:153068/148‑2 (MQ=255) aTGGCCGCTTGACCACCTCGGCATACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAg > 6:289035/1‑149 (MQ=255) ccGCTTGACCACCTCGGCATACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGtgct > 5:96966/1‑149 (MQ=255) gACCACCTCGGCATACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGtgctcctgc < 5:289035/148‑1 (MQ=255) gACCACCTCGGCATACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGtgctcctg < 3:39559/147‑1 (MQ=255) caccTCGGCATACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGCTGATCTCCGGctt < 2:59612/135‑3 (MQ=255) caccTCGGCATACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGCTGATCTCCGGctt > 1:59612/1‑133 (MQ=255) aTACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTc > 8:114205/1‑147 (MQ=255) cACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGc > 4:199711/1‑148 (MQ=255) aCGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAACCCCGGGCTGACGCAAATCCAGCTAGCCCAGCGAACAGGCCACGCCAAGCGCCGCCAGCTCGAAGACGGCGATCAGCTCCGGCAAGTGCTACTGCTCACGGTTGTCAAGGCTa > 3:21151/1‑149 (MQ=255) aCGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTa > 7:77138/1‑149 (MQ=255) cgccgcCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTAc > 1:142789/1‑149 (MQ=255) aaCCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGAt > 5:5716/1‑149 (MQ=255) ccAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCtt > 6:185906/1‑149 (MQ=255) tGGCGCTCACGCCAGCCAAACCCGGGCTGACCCAAATCCAGATAGCCCAGCGCACATGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCTGGCTACGGCGGATCTTGTCAcc < 8:131579/149‑1 (MQ=255) gcgcTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCt < 3:199711/149‑1 (MQ=255) cTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTgcg > 6:156932/1‑149 (MQ=255) tCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTgcgc > 7:249226/1‑149 (MQ=255) aCGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCtt > 4:222512/1‑149 (MQ=255) gccagccaAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTg > 4:267738/1‑148 (MQ=255) agccaAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACCCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGcagc < 8:77138/149‑1 (MQ=255) ccGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCa < 4:171656/106‑1 (MQ=255) ccGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCa > 3:171656/1‑106 (MQ=255) ccGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATc > 7:109140/1‑149 (MQ=255) cGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGGTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATcc < 4:182964/149‑1 (MQ=255) aTCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCct < 8:249226/149‑1 (MQ=255) tCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCtt > 5:171767/1‑107 (MQ=255) tCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCtt < 6:171767/107‑1 (MQ=255) tCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCctc < 3:222512/149‑1 (MQ=255) cAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTg < 3:267738/149‑1 (MQ=255) gCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCa < 7:114205/149‑1 (MQ=255) cccAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAgccagcca > 1:130020/1‑123 (MQ=255) cccAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAgccagcca < 2:130020/123‑1 (MQ=255) aGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGaa < 6:5716/149‑1 (MQ=255) caGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGctct > 8:213561/1‑148 (MQ=255) gCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATa > 1:115066/1‑149 (MQ=255) cACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATAcc > 4:143512/1‑149 (MQ=255) cGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATACCgg < 5:156932/149‑1 (MQ=255) gccgccAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATACCGGCTCGaca < 7:213561/148‑1 (MQ=255) ctcaagttCGAAGCCTGAGAGCAGCTCCGGCAAGTGCTCCTGATCCAGGTTGTCAAGGCTACTGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATACCGGCTCGACACTg < 4:21151/142‑1 (MQ=255) ccAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATACCGGCTCGACACTGcc > 4:218320/1‑149 (MQ=255) ccAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATACCGGCTCGACACTGcc < 2:115066/149‑1 (MQ=255) ggTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATACCGGCTCGACACTGCCGCa < 6:96966/149‑1 (MQ=255) gTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATACCGGCTCGACACTGCCGCAt < 2:142789/149‑1 (MQ=255) ttgCCGGAGCTGATCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATACCGGCTCGACACTGCCGCATCCAt > 3:92649/3‑149 (MQ=255) cGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATACCGGCTCGACACTGCCGCATCCATGATc < 5:185906/149‑1 (MQ=255) | CGACCATCGATGGCCGCTTGACCACCTCGGCATACCACGCCGCCAACCCAGGCTGGCGCTCACGCCAGCCAAACCCGGGCTGACGCAAATCCAGATAGCCCAGCGCACAGGCCACGCCAATCGCCGCCAGGTCGAAGCCGGAGATCAGCTCCGGCAAGTGCTCCTGCTCCAGGTTGTCCAGGCTACGGCGGATCTTGTCACCCTGCGCTTGCAGCCAGCCATCCCAGCGCTTGTCCTCTGGCCGCAGGAAGCTCTCATACCGGCTCGACACTGCCGCATCCATGATC > NC_002947/401922‑402208 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |