| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,487,908 | A→T | 7.7% | M413L (ATG→TTG) ‡ | PP_4824 → | two‑component system sensor histidine kinase/response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,487,908 | 0 | A | T | 7.7% | 223.0 / 5.2 | 77 | M413L (ATG→TTG) ‡ | PP_4824 | two‑component system sensor histidine kinase/response regulator |
| Reads supporting (aligned to +/- strand): ref base A (32/39); new base T (3/3); total (35/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAATCC > NC_002947/5487760‑5488054 | ccTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGa < 3:263584/149‑1 (MQ=255) cTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGAt < 8:160518/149‑1 (MQ=255) ctcAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACgg > 5:33439/1‑149 (MQ=255) ctcAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACgg > 3:100031/1‑149 (MQ=255) aaCCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGc < 1:161165/147‑1 (MQ=255) aaCCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCAACGAAATCCGCACCCCGATGAACGGCGt > 8:79443/1‑149 (MQ=255) cTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCAACGAAATCCGCACCCCGATGAACGGCGTGCt > 8:262428/1‑149 (MQ=255) tGGCGGTCAGTGAACGGCTGCGTCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTc > 8:55841/1‑149 (MQ=255) gCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTc < 6:33439/147‑1 (MQ=255) gCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCgg < 5:254515/149‑1 (MQ=255) cGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGc < 3:21967/149‑1 (MQ=255) ggTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACGCCGTTCATCGGGGTGcggattt < 3:258939/149‑7 (MQ=255) gTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCTGCCGTGCACTGGCCGCCAGCGTGGAGGCGAAAAACACCCCAAAAGCCGATTTTATGGCAAAAAAAACCCACAAAAACCGCCCCCCGATGAACGGCGTGCTCgg > 1:95341/1‑149 (MQ=255) aGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGAc > 2:290853/1‑149 (MQ=255) tGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACGCCGTTCATCGGGGTGcgga > 6:84251/1‑137 (MQ=255) tGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACGCCGTTCATCGGGGTGcgga < 5:84251/140‑4 (MQ=255) tGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACt > 3:295957/1‑148 (MQ=255) gAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTg < 7:262428/148‑1 (MQ=255) aCGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGaa < 2:263251/148‑1 (MQ=255) aCGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAAc < 5:270817/149‑1 (MQ=255) cGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAAct < 7:55841/149‑1 (MQ=255) cTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAActgct > 4:214961/1‑149 (MQ=255) cggcgCATAAGCGAGGAGTGTTTCAGCTCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCCGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAActgctgct < 8:19782/149‑1 (MQ=255) gcgcATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTgg < 4:100031/149‑1 (MQ=255) aaGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACGCCGTTCATCGGGGTGcggat < 7:250946/123‑5 (MQ=255) aaGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACGCCGTTCATCGGGGTGcggat > 8:250946/1‑119 (MQ=255) gCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCg > 3:57249/1‑149 (MQ=255) gaggagCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCt > 8:223778/1‑149 (MQ=255) aggagCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTgg < 4:264313/138‑1 (MQ=255) aggagCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTgg > 3:264313/1‑138 (MQ=255) ggagCGTTTCAGCGCCAGCCGTGCACTGGCCTCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑t < 1:142980/149‑1 (MQ=255) gCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCAGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCgg < 1:79490/149‑1 (MQ=255) cGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCGTAGATCAGCCACGAAATGCGCAGCCCGATGAACGGGGTGCTCGGCATGACTGAACTGCTGCTGGGCACTCGGCTG‑TCgg < 4:215348/148‑1 (MQ=255) gttCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTg > 3:150085/2‑148 (MQ=255) tCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGaa < 7:223778/148‑1 (MQ=255) tCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGaa < 4:130400/148‑1 (MQ=255) gTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTAt < 4:295957/149‑1 (MQ=255) gTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTAt > 2:42117/1‑149 (MQ=255) gccgccAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGc > 1:233619/1‑111 (MQ=255) gccgccAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGc < 2:233619/111‑1 (MQ=255) gccgccAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGAc > 3:301800/1‑149 (MQ=255) gccAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCAt < 3:167166/149‑1 (MQ=255) aGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCca < 3:214961/149‑1 (MQ=255) gATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGAtt < 6:169324/130‑1 (MQ=255) gATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGAtt > 5:169324/1‑130 (MQ=255) cGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGcgcg > 5:173311/1‑149 (MQ=255) ggAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCgg < 3:132962/149‑1 (MQ=255) ggAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCgg < 1:290853/149‑1 (MQ=255) tCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAAc < 4:150085/149‑1 (MQ=255) aaCGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAAc > 8:97828/1‑147 (MQ=255) gAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCt > 1:36481/1‑149 (MQ=255) tttCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGa > 7:262236/1‑148 (MQ=255) ttCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGGCTGAACTGCTGCTGGGCACACCGCTG‑TCGGTg > 1:238610/1‑89 (MQ=255) ttCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTg < 2:238610/89‑1 (MQ=255) gCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACg > 8:173059/1‑148 (MQ=255) gCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACg > 3:27856/1‑148 (MQ=255) tCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTg < 6:173311/149‑1 (MQ=255) cAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGAtt > 4:150912/1‑89 (MQ=255) cAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGAtt < 3:150912/89‑1 (MQ=255) aGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGa < 2:95341/149‑1 (MQ=255) ccACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGACa > 4:67743/1‑149 (MQ=255) cACGAAATCAGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGACAt > 5:137120/1‑149 (MQ=255) cGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGACAttt > 8:201864/1‑149 (MQ=255) gAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGACATTTc > 1:154607/1‑149 (MQ=255) aaTCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGACATTTCCa < 3:67743/149‑1 (MQ=255) gagCACGCCGTTCATCGGGGTGCTCGGCATGACTGAACTGCTGCTGCGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGCGCTGCTGACGCTGATCAACGAAATTCTGTACATTTCCAAGc > 7:21218/3‑149 (MQ=255) cGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGATATTCTGGACATTTCCAAGc < 4:301800/148‑1 (MQ=255) cGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGACATTTCCAAGCt < 2:154607/149‑1 (MQ=255) gCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACTAGCTGCTGACGCTGATCAACGAAATTCTGGACATTTCCAAGCTg < 7:79443/149‑1 (MQ=255) gCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACg > 6:134562/1‑126 (MQ=255) gCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACg < 5:134562/126‑1 (MQ=255) gCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGACATTTCCAAGCTg < 7:97828/149‑1 (MQ=255) gCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGACATTTCCAAGCTg < 2:36481/149‑1 (MQ=255) aCCCCGATTAACGTTGTGCTCTTCATTACTTAACTGCTGGTTTTAACACAGGTGTTCGGT‑AAGAAACGTGATTCTGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGACATTTCCAAGCTg < 1:250383/147‑1 (MQ=255) cccGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCgg > 2:166823/1‑95 (MQ=255) cccGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCgg < 1:166823/95‑1 (MQ=255) cGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGCAGCAACGTGATTATGTGCAGACCATCCACAGCTCGGGCAACGAGCTGCGGACGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAAGcc > 8:274117/1‑149 (MQ=255) cGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAATcc < 8:262236/149‑1 (MQ=255) | CCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGC‑‑‑GATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTG‑TCGGTGAAGCAACGTGATTATGTGCAGACCATCCACAGCGCGGGCAACGAGCTGCTGACGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAATCC > NC_002947/5487760‑5488054 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |