Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	5,581,667	G→A	6.1%	P234P (CCG→CCA)	PP_4910 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	5,581,667	0	G	A	6.1%	192.4 / 2.7	65	P234P (CCG→CCA)	PP_4910	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (28/33);  new base A (2/2);  total (30/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.35e-01

GTCAGGGTCGCTTCATCACCCTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGAC  >  NC_002947/5581519‑5581808                                                                                                                                                     |                                                                                                                                              gTCAGGGTCGCTTCATCACCCTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCccg                                                                                                                                               >  3:91145/1‑149 (MQ=255)       gTCGCTTCATCACCCTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCccggagccg                                                                                                                                         >  6:37744/1‑149 (MQ=255)          gCTTCATCACCCTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCccggagccggag                                                                                                                                      <  7:198013/149‑1 (MQ=255)          gCTTCATCACCCTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCccggagccgga                                                                                                                                       <  1:163310/148‑1 (MQ=255)            ttCATCACCCTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCggagccggagcc                                                                                                                                    >  2:276777/1‑149 (MQ=255)              catcaCCCTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCggagccggggccgc                                                                                                                                  >  6:143137/1‑147 (MQ=255)               atcaCCCTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCg                                                                                                                                  <  4:276422/148‑1 (MQ=255)               atcaCCCTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCg                                                                                                                                  <  4:15096/148‑1 (MQ=255)                  aCCCTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTACATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAgg                                                                                                                               <  6:127676/148‑1 (MQ=255)                    ccTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAgg                                                                                                                               >  5:119707/1‑146 (MQ=255)                    ccTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAgg                                                                                                                               >  3:201643/1‑146 (MQ=255)                    ccTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAg                                                                                                                            <  5:37744/149‑1 (MQ=255)                     cTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAg                                                                                                                                <  4:103407/144‑1 (MQ=255)                     cTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAg                                                                                                                                >  3:103407/1‑144 (MQ=255)                       gCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAgacg                                                                                                                         >  3:230367/1‑149 (MQ=255)                       gCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAgac                                                                                                                          >  3:103735/1‑148 (MQ=255)                         cACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATTGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAgacgac                                                                                                                       <  3:219421/149‑1 (MQ=255)                             gctgcAACTGCGGGTATGGCTGCGCGACCCGCAACCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGacgacgacg                                                                                                                   >  4:207942/1‑149 (MQ=255)                                 cAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGc                                                                                                                <  6:119707/148‑1 (MQ=255)                                   aCTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGt                                                                                                             >  5:255390/1‑149 (MQ=255)                                       ggtatagggCTGCGGGTCGCGCAGCC‑‑ATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTcgacg                                                                                                       >  5:199474/8‑149 (MQ=255)                                       cGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCccggagccggag                                                                                                                                      >  2:73409/1‑120 (MQ=255)                                       cGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCccggagccggag                                                                                                                                      <  1:73409/120‑1 (MQ=255)                                       cGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTcg                                                                                                          <  4:230367/148‑1 (MQ=255)                                       cGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTcg                                                                                                          <  7:210198/148‑1 (MQ=255)                                       cGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTc                                                                                                           <  1:276777/147‑1 (MQ=255)                                          gTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTcgacga                                                                                                      >  6:164778/1‑149 (MQ=255)                                                 tGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTc                                                                                                           <  4:137912/137‑1 (MQ=255)                                                 tGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTc                                                                                                           >  3:137912/1‑137 (MQ=255)                                                   cgcgACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACg                                                                                              <  4:101452/148‑1 (MQ=255)                                                           gCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGccc                                                                                     >  6:131869/1‑149 (MQ=255)                                                           gCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGccc                                                                                     >  2:150765/1‑149 (MQ=255)                                                               cccTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCgg                                                                                  >  2:14477/1‑148 (MQ=255)                                                               cccTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGc                                                                                 >  5:82998/1‑149 (MQ=255)                                                                ccTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCAGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCa                                                                                >  6:100799/1‑149 (MQ=255)                                                                ccTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCAGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCa                                                                                >  6:96575/1‑149 (MQ=255)                                                                   ataCCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCAcc                                                                              >  3:63892/1‑148 (MQ=255)                                                                    taCCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCAcc                                                                              <  4:201643/147‑1 (MQ=255)                                                                      ccccGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTc                                                                                                           >  7:157487/1‑116 (MQ=255)                                                                      ccccGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTc                                                                                                           <  8:157487/116‑1 (MQ=255)                                                                      ccccGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCaa                                                                           <  1:150765/148‑1 (MQ=255)                                                                       cccGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAgg                                                                         >  2:50492/1‑149 (MQ=255)                                                                         cGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCg                                                                                         >  6:90111/1‑131 (MQ=255)                                                                         cGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCg                                                                                         <  5:90111/131‑1 (MQ=255)                                                                            ccACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCa                                                                    <  3:207942/149‑1 (MQ=255)                                                                                cgaccgCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACcgc                                                                >  5:50163/1‑149 (MQ=255)                                                                                 gaccgCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACcgcg                                                               >  1:38699/1‑149 (MQ=255)                                                                                 gaccgCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACcgcg                                                               >  4:88843/1‑149 (MQ=255)                                                                                  accgCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAgg                                                                                                                               >  2:188069/1‑84 (MQ=255)                                                                                        aGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAg                                                        <  6:50163/149‑1 (MQ=255)                                                                                         ggACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAgg                                                       <  4:91145/149‑1 (MQ=255)                                                                                             gagaTTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCAccc                                                                             <  7:193089/123‑1 (MQ=255)                                                                                             gagaTTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCAccc                                                                             >  8:193089/1‑123 (MQ=255)                                                                                              agaTTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGcc                                                  <  6:216568/149‑1 (MQ=255)                                                                                                aTTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCt                                                <  2:38699/149‑1 (MQ=255)                                                                                                 ttGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTg                                               <  6:82998/149‑1 (MQ=255)                                                                                                    gCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGa                                             <  5:164778/148‑1 (MQ=255)                                                                                                       aCATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGAc                                         <  5:312287/149‑1 (MQ=255)                                                                                                              ccgccAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATg                                  <  4:63892/149‑1 (MQ=255)                                                                                                                 ccAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATgac                                >  5:139675/1‑148 (MQ=255)                                                                                                                 ccAGCTGCATGCACGCCTGGCCCCGACTCCGCACCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATgac                                >  1:18676/1‑148 (MQ=255)                                                                                                                    gCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCAcc                                                                              >  5:181551/1‑99 (MQ=255)                                                                                                                    gCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCAcc                                                                              <  6:181551/99‑1 (MQ=255)                                                                                                                         atgcaCGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGcc                       <  4:103735/149‑1 (MQ=255)                                                                                                                             aCGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGcc                                                  >  6:164325/1‑118 (MQ=255)                                                                                                                             aCGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGcc                                                  <  5:164325/118‑1 (MQ=255)                                                                                                                                 cTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCgg               <  1:50492/149‑1 (MQ=255)                                                                                                                                  gggCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGc              <  7:25230/148‑1 (MQ=255)                                                                                                                                    gCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGc              <  6:139675/147‑1 (MQ=255)                                                                                                                                     ccccGCCTCCGCCCCCAGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCctg           <  5:100799/149‑1 (MQ=255)                                                                                                                                     ccccGCCTCCGCCCCCAGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCctg           <  5:96575/149‑1 (MQ=255)                                                                                                                                         gCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCctgctg        >  8:46032/1‑148 (MQ=255)                                                                                                                                              cGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGgacgac  <  3:88843/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              GTCAGGGTCGCTTCATCACCCTGCCACTGCTGCAACTGCGGGTATGGCTGCGCGACCCGCAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGAC  >  NC_002947/5581519‑5581808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑