Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,612,542 | C→T | 6.8% | R122C (CGC→TGC) | PP_4932 → | D‑arabinose 1‑dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,612,542 | 0 | C | T | 6.8% | 171.8 / 2.7 | 59 | R122C (CGC→TGC) | PP_4932 | D‑arabinose 1‑dehydrogenase |
Reads supporting (aligned to +/- strand): ref base C (23/32); new base T (2/2); total (25/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-01 |
CAGCGAAGAACGCCTGGGCCCGCTGCTGCGCGGCCAACGTGATGAATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCAGGAGGGCAAGATCCTCGGTTTCGGGCTGTCC > NC_002947/5612397‑5612682 | caGCGAATAACGCCTGGGCCCGCTGCTGCGCGGCCAACGTGATGAATGGGTAATAGTCAGCAAGGTCGGTGAAGAGTTCGAGGAATGCCTGTCTCATTTCGACTTCAGCTCTGCCCACACCCGCCGCACGTTGGAGCG‑AAGCCTGCGcc > 4:243224/1‑149 (MQ=255) cGAAGAACGCCTGGGCCCGCTGCTGCGCGGCCAACGTGATGAATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGc < 3:155663/149‑1 (MQ=255) cGCTGCTGCGAGGCCAACGTGATGAATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATc < 3:243224/149‑1 (MQ=255) tgctgcGCGGCCAACGTGATGAATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGTGCCGGCTCGAAACCGACCGCATCGaa > 4:222375/1‑149 (MQ=255) tgctgcGCGGCCAACGTGATGAATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGTGCCGGCTCGAAACCGACCGCATCGaa > 4:218313/1‑149 (MQ=255) cgcgGCCAACGTGATGAATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAActggt < 3:50940/149‑1 (MQ=255) gCCAACGTGATGAATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAActggtgctg > 2:181470/1‑149 (MQ=255) cAACGTGATGAATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTGGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAAGCGACCGCATCGAActggtgctggt < 5:296283/149‑1 (MQ=255) cAACGTGATGAATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAActggtgctggt < 7:101088/149‑1 (MQ=255) cAACGTGATGAATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTACGACTTCAGCGCTGCCCACACCCGCCGCTCTGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAActggtgctggt > 5:104373/1‑149 (MQ=255) tgatgaATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCAtt < 6:206499/149‑1 (MQ=255) gatgaATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTc > 6:15221/1‑149 (MQ=255) aTGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACg < 6:121618/149‑1 (MQ=255) gTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAActg < 7:54114/120‑1 (MQ=255) gTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAActg > 8:54114/1‑120 (MQ=255) gTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCt > 6:105866/1‑149 (MQ=255) aGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGGGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTgg < 7:123939/148‑1 (MQ=255) aaGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCAt < 1:168754/149‑1 (MQ=255) aGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATc < 5:15221/149‑1 (MQ=255) tGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAActg < 7:3514/106‑1 (MQ=255) tGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAActg > 8:3514/1‑106 (MQ=255) tGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGaa > 6:109958/1‑148 (MQ=255) tGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGaa > 1:12210/1‑148 (MQ=255) gagTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAAcagca < 1:103889/149‑1 (MQ=255) ttCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAAcagcag > 7:175611/1‑147 (MQ=255) ttCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAAcagcag > 6:245284/1‑147 (MQ=255) ctaGGATGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACAGCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGAATTCCGACGGCAACGACCTGGCCATCCTCGAAGAGCaggag < 6:104373/146‑1 (MQ=255) cGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCaggag < 5:109958/148‑1 (MQ=255) aGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTc > 8:100680/1‑149 (MQ=255) ggAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCt < 7:220302/149‑1 (MQ=255) aaGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTAc < 2:45805/149‑1 (MQ=255) cTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGAc > 7:153478/1‑149 (MQ=255) cTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGACTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGAc > 3:149598/1‑149 (MQ=255) gCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCGCCAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACg > 1:218630/1‑102 (MQ=255) gCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACg < 2:218630/101‑1 (MQ=255) cGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGaa < 3:252234/148‑1 (MQ=255) cGACTTCAGCGCTGCCAACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCAATCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGaa > 4:252234/1‑148 (MQ=255) cTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCa < 1:181470/149‑1 (MQ=255) cTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCa < 1:268954/149‑1 (MQ=255) cAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCTGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCaa < 1:14257/147‑1 (MQ=255) aGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGTGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCa < 3:218313/149‑1 (MQ=255) aGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGTGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCa < 3:222375/149‑1 (MQ=255) gcTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGACTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCagga < 4:149598/149‑1 (MQ=255) cacaCCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAAc > 6:76515/1‑133 (MQ=255) cacaCCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAAc < 5:76515/133‑1 (MQ=255) acacCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAAc > 2:172426/1‑132 (MQ=255) acacCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACACCAGGAGGTCTACCAGACCCTGGCCGAAc < 1:172426/132‑1 (MQ=255) acCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCAGGAGGGc > 4:57200/1‑144 (MQ=255) cgcTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCAGGAGGGCAAGATCCTCgg < 7:100680/149‑1 (MQ=255) gTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCAGGAGGGCAAGATCCTCGGTTTCgg < 5:245284/149‑1 (MQ=255) gTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCAGGAGGGCAAGATCCTCGGTTTCgg < 2:12210/149‑1 (MQ=255) ggAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCaggagg < 5:292447/128‑1 (MQ=255) ggAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCaggagg > 6:292447/1‑128 (MQ=255) gcg‑cAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCAGGAGGGCAAGATCCTCGGTTTCGGGCTGt > 7:16200/1‑149 (MQ=255) g‑cAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCAGGAGGGCAAGATCCTCGGTTTCGGGCTGTcc < 8:153478/149‑1 (MQ=255) ccTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCAGGAGGGCAAGATCCTCg < 6:227307/131‑1 (MQ=255) ccTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCAGGAGGGCAAGATCCTCg > 5:227307/1‑131 (MQ=255) ccTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCAGGAGGGCAAGATCCTCg > 5:223081/1‑131 (MQ=255) ccTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCAGGAGGGCAAGATCCTCg < 6:223081/131‑1 (MQ=255) | CAGCGAAGAACGCCTGGGCCCGCTGCTGCGCGGCCAACGTGATGAATGGGTAATCGTCAGCAAGGTCGGTGAAGAGTTCGAGGAAGGCCTGTCGCATTTCGACTTCAGCGCTGCCCACACCCGCCGCTCGGTGGAGCG‑CAGCCTGCGCCGGCTCGAAACCGACCGCATCGAACTGGTGCTGGTGCATTCCGACGGCAACGACCTGGCCATCCTCGAACAGCAGGAGGTCTACCAGACCCTGGCCGAACTCAAGCAGGAGGGCAAGATCCTCGGTTTCGGGCTGTCC > NC_002947/5612397‑5612682 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |