Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,679,841 | G→T | 11.1% | intergenic (+60/‑104) | bioA → / → rsmE | adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA/16S rRNA (uracil(1498)‑N(3))‑methyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,679,841 | 0 | G | T | 11.1% | 158.8 / 10.0 | 54 | intergenic (+60/‑104) | bioA/rsmE | adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA/16S rRNA (uracil(1498)‑N(3))‑methyltransferase |
Reads supporting (aligned to +/- strand): ref base G (22/26); new base T (3/3); total (25/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.57e-01 |
CCAGCGAAGGCATCGATATCGCCACCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTG > NC_002947/5679693‑5679987 | ccAGCGAAGGCATCGATATCGCCACCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCg < 7:277009/149‑1 (MQ=255) cAGCGAAGGCATCGATATCGCCACCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCg > 8:277009/1‑148 (MQ=255) aGCGAAGGCATCGATATCGCCACCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGaa > 3:117427/1‑149 (MQ=255) aGCGAAGGCATCGATATCGCCACCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGaa < 5:153569/149‑1 (MQ=255) aaGGCATCGATATCGCCACCCGCGACAGCGGCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGccc < 6:160884/149‑1 (MQ=255) gCATCGATATCGCCACCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTg < 7:34258/149‑1 (MQ=255) gATATCGCCACCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCTTCGCCCTTgttcg < 3:109308/148‑5 (MQ=255) gATATCGCCACCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAgg > 4:156617/1‑149 (MQ=255) atatCGCCACCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCCCACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAgg > 7:29768/1‑148 (MQ=255) atatCGCCACCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGc < 3:182106/149‑1 (MQ=255) gCCACCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACcgc < 6:161006/149‑1 (MQ=255) aataCCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACGTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACcgc < 8:262949/146‑1 (MQ=255) ccGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGgcgc < 3:87933/149‑1 (MQ=255) cgcgACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGcc < 4:245133/149‑1 (MQ=255) tACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCa > 1:162093/1‑149 (MQ=255) ggCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGa > 6:240518/1‑149 (MQ=255) aCTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGc < 3:156617/149‑1 (MQ=255) aCCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATc > 3:264309/1‑136 (MQ=255) aCCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATc < 4:264309/136‑1 (MQ=255) aCCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTc < 3:134114/149‑1 (MQ=255) cccGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGgcgc > 5:187065/1‑109 (MQ=255) cccGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGgcgc < 6:187065/109‑1 (MQ=255) ccGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCca < 7:141273/142‑1 (MQ=255) ccGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCca > 8:141273/1‑142 (MQ=255) cgACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCt < 6:152814/149‑1 (MQ=255) cccGGGATAGGCCCGGCAATTCGCCACACCACTTTTACTGTGGGAGCGGGCGCGCCCGAGCACAAGGGCGGAGACCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGCCGCATCGACACGCCCGCTCCCACAGGGGATCTGct > 5:219355/1‑148 (MQ=38) ccGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGctt < 2:75059/149‑3 (MQ=255) cccGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGtct > 7:1363/1‑141 (MQ=255) cccGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGtct < 8:1363/141‑1 (MQ=255) gCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCCCCCACAGGGGATCTGCGTCTCTCTATTTACCg < 2:162093/149‑1 (MQ=255) aaTTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCCCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAg > 6:100229/1‑149 (MQ=255) gCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAAc > 5:83719/1‑149 (MQ=255) gCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAAc < 5:104119/149‑1 (MQ=255) ccACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAAcc > 1:33428/1‑149 (MQ=255) accacTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATg < 5:100229/149‑1 (MQ=255) ccacTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGa < 6:151305/94‑1 (MQ=255) ccacTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGa > 5:151305/1‑94 (MQ=255) ccacTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATga < 1:203279/149‑1 (MQ=255) acTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATgaga < 2:33428/149‑1 (MQ=255) cTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTccc > 8:259796/1‑149 (MQ=255) cTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCATGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTccc > 7:135014/1‑149 (MQ=255) gggAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGctt > 5:207371/1‑149 (MQ=255) aGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGcttctt < 5:240518/149‑1 (MQ=255) aGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGcttctt < 7:259796/149‑1 (MQ=255) gCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATc > 7:190036/1‑148 (MQ=255) cccGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGcc > 2:47945/1‑149 (MQ=255) gcgAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCCCTTCTTCATCGACGccccc > 5:105351/1‑149 (MQ=255) tggcAAGGGCTTTGCCCTTGTCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGccccct > 4:222524/4‑147 (MQ=255) tggcAAGGGCTTCGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCt > 3:186976/4‑149 (MQ=255) ggcAAGGGCTTCGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGt < 1:187163/88‑1 (MQ=255) ggcAAGGGCTTCGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGt > 2:187163/3‑90 (MQ=255) aaCAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTg < 8:190036/149‑1 (MQ=255) gcAAGGGCTTTGCCCTTGTCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGccccct < 3:222524/145‑2 (MQ=255) aaGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGc > 8:292351/1‑149 (MQ=255) aGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGcc < 6:83719/149‑1 (MQ=255) gCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTg > 7:28808/1‑149 (MQ=255) | CCAGCGAAGGCATCGATATCGCCACCCGCGACAGCGTCAGTGTCGCAGTACCGGCCAACTTCCACCCCGACTTCCGCGACCCGGGCTAGGCCCGGCAATTCGCCACACCACTTTTCCTGTGGGAGCGGGCGAGCCCGCGAACAAGGGCGAAGCCCTTGCCAGGCACCGCGGCGCCTGATTCGCGGCGGTTCGACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTG > NC_002947/5679693‑5679987 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |