| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,798,193 | C→T | 8.1% | intergenic (‑294/+80) | gltB ← / ← PP_5077 | L‑glutamate synthase subunit alpha/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,798,193 | 0 | C | T | 8.1% | 209.0 / 6.2 | 74 | intergenic (‑294/+80) | gltB/PP_5077 | L‑glutamate synthase subunit alpha/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (35/33); new base T (3/3); total (38/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.53e-01 | |||||||||||
ATGTCTCGCCATTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGAC > NC_002947/5798048‑5798341 | aTGTCTCGCCATTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCcgcg > 2:88091/1‑149 (MQ=255) tctcGCCATTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑c > 3:89270/1‑149 (MQ=255) gCCATTGAAAATTTATGTCGCAATGTTGAACGTTCTTGCTCCATGCGCCGTCATCGCCGCT‑TGGCTCCAGCCAGAAGCGTT‑TCAGCCATGACTTCAACTAAGGTCGTGTGG‑‑CCGTCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑ctg < 8:167111/147‑3 (MQ=255) aTTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGgcg > 7:31854/1‑147 (MQ=255) aTTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCCGGACAGAAAAGCCTGCCGCGCT‑CGGGCgca < 1:24711/149‑1 (MQ=255) aaaaTTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTGTGGCTCGAGTCTGAAGCGTT‑TAAGCCATGAATGCAACTAAGGGCTTGTGG‑‑CCGGAAGTCCGGGAAAGAAAAGCATGCCGCGCT‑CGGgcgcgg > 1:234643/1‑145 (MQ=255) aaaTTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAgg < 5:227949/149‑1 (MQ=255) tGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCTGCGCC‑CGAGCGCGGCAGGCttttc < 8:285279/148‑5 (MQ=255) tGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTc > 7:89056/1‑148 (MQ=255) tGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCg < 4:89270/149‑1 (MQ=255) gTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCg > 2:257984/1‑148 (MQ=255) tCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCcgcg > 2:48229/1‑125 (MQ=255) tCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCcgcg < 1:48229/125‑1 (MQ=255) tCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGa < 2:287251/148‑1 (MQ=255) cGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGt < 7:170326/144‑1 (MQ=255) cGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGt > 8:170326/1‑144 (MQ=255) gCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑g > 3:218974/1‑149 (MQ=255) aaTTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑Gc > 8:120016/1‑148 (MQ=255) aaTTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑Gc > 6:44373/1‑148 (MQ=255) ttGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGa < 4:218974/148‑1 (MQ=255) ttGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGa < 1:257984/148‑1 (MQ=255) tGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGGACCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAg < 1:242158/148‑1 (MQ=255) aaTGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTTGTCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAAtt > 1:80323/1‑149 (MQ=255) tttttttGCGCCATGCGAGGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCATCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGc < 5:267222/147‑1 (MQ=255) ttGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAg < 4:119535/148‑1 (MQ=255) ccGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGgcggcg > 3:60012/1‑149 (MQ=255) gTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCTCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTTGGcggcggt < 6:304839/149‑2 (MQ=255) aTAGGGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGt < 4:60012/148‑1 (MQ=255) tAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTa > 5:122488/1‑107 (MQ=255) tAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTa < 6:122488/107‑1 (MQ=255) ggCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCgcagc > 7:24774/1‑92 (MQ=255) ggCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCgcagc < 8:24774/92‑1 (MQ=255) gCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCg > 3:8706/1‑148 (MQ=255) gCTCGAGTCTGAAGCGTT‑TCAGCCATGACTCCAACTAAGCGCTTGTGG‑‑CAGGAAGTCCGCGACATAAAAGCCTGCCGCGCA‑CGGCAGCACAAGGCAAGTCGAAA‑‑CCTAGAATACGCTTAGCTACAGGGCCGCGGCGTGAAgcccccag > 3:199086/1‑146 (MQ=255) tCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCgg > 2:208884/1‑147 (MQ=255) cGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAg < 5:44373/149‑1 (MQ=255) tGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTTGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGTCGCCCGGAAGGTAt > 6:235099/1‑147 (MQ=255) aaGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCTGCGCC‑CGAGCGCGGCAgg < 1:13088/83‑1 (MQ=38) aaGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCTGCGCC‑CGAGCGCGGCAgg > 2:13088/1‑83 (MQ=38) aaGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGc < 7:120016/149‑1 (MQ=255) aGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCg > 8:9313/1‑149 (MQ=255) cGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCggg < 1:208884/149‑1 (MQ=255) tCATCCATGACAGCAACTTAGGGCTTGTGG‑‑CCGGCATGCCGGGACATAAAAGGCGGCCGGGGT‑CGGGCGGAGGATGCTTGGCGATACTGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGc < 1:88091/148‑1 (MQ=255) aGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTg < 8:31854/148‑1 (MQ=255) gCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCgggg < 4:105475/115‑1 (MQ=255) gCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCgggg > 3:105475/1‑115 (MQ=255) gCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGAGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTgga > 5:227994/1‑148 (MQ=255) tGCAACTAAGGGCTTGTGG‑‑CCAGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCggg > 4:2610/1‑134 (MQ=255) tGCAACTAAGGGCTTGTGG‑‑CCAGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCggg < 3:2610/134‑1 (MQ=255) gCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTTGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTg < 3:213603/138‑1 (MQ=255) gCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTg > 4:213603/1‑138 (MQ=255) cAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTGCGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCttg > 1:75794/1‑149 (MQ=255) cAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCttgt > 6:276862/1‑149 (MQ=255) aCTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCttgttg < 8:6332/149‑1 (MQ=255) aGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGaa < 1:107180/114‑1 (MQ=255) aGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGaa > 2:107180/1‑114 (MQ=255) ggCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGgcggcg < 5:134675/94‑1 (MQ=255) ggCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGgcggcg > 6:134675/1‑94 (MQ=255) gCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTg > 1:135856/1‑149 (MQ=255) gtgG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGTAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGcc < 4:8706/147‑1 (MQ=255) cGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGct > 8:203696/1‑118 (MQ=255) cGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGct < 7:203696/118‑1 (MQ=255) cGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGcc > 7:247347/1‑148 (MQ=255) ggACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACg < 1:69985/136‑1 (MQ=255) ggACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACg > 2:69985/1‑136 (MQ=255) aGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGtt > 1:129025/1‑148 (MQ=255) gAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTa < 5:276862/149‑1 (MQ=255) gAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTa < 8:89056/149‑1 (MQ=255) aaaaGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGt < 6:110395/132‑1 (MQ=255) aaaaGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGt > 5:110395/1‑132 (MQ=255) ctaGCCTGCTGCGCC‑CGAGCGCGGCAGGGTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTAc > 1:173936/3‑148 (MQ=255) ccTGCTGCGCC‑CGAGCGCGGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTATTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTgg < 2:519/99‑1 (MQ=38) ccTGCTGCGCC‑CGAGCGCGGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTATTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTgg > 1:519/1‑99 (MQ=38) ccTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGcc > 1:275086/1‑149 (MQ=255) ccTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGATGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGcc > 3:229326/1‑149 (MQ=255) cTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCt < 2:275086/149‑1 (MQ=255) tgctgcGCC‑CGAGCGCGGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTg > 7:155567/1‑149 (MQ=255) tgctgcGCC‑CGAGCGCGGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTCGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTg > 5:213559/1‑149 (MQ=255) gCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTg > 3:115022/1‑148 (MQ=255) ccGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGa > 5:189632/1‑149 (MQ=255) cgctCT‑CTGGCGTAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGGTTAGCTACTGGGCGGCGGTGTGATGCCGCCCGGATGGTTTCAGCGGGCCGTGGCCAGCTCTTGTAGGAAGCTGCCGACGGTACGTGGCCAATGTTTACCAGCCTGGAc < 4:199086/149‑1 (MQ=255) | ATGTCTCGCCATTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCT‑TGGCTCGAGTCTGAAGCGTT‑TCAGCCATGACTGCAACTAAGGGCTTGTGG‑‑CCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCT‑CGGGCGCAGCAGGCTAGTCGAAA‑‑GCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGAC > NC_002947/5798048‑5798341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |