Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,940,497 G→T 8.5% G112G (GGG→GGT yhhJ → translation‑like protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,940,4970GT 8.5% 168.3 / 4.6 55G112G (GGG→GGTyhhJtranslation‑like protein
Reads supporting (aligned to +/- strand):  ref base G (24/26);  new base T (3/2);  total (27/28)
Fisher's exact test for biased strand distribution p-value = 6.69e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.77e-01

GCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAACGAGCAAAGCCCGGTGCTGAT  >  NC_002947/5940356‑5940637
                                                                                                                                             |                                                                                                                                            
gCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCGGCCTCCGCCGCGCCGGGACCCCGCCCTGGCCCGCGGCCCCTACACCGTCGGCCTCAAATTGCCGGGTTACTTCCACAGCGCCCTGCTGGCCGGgcgcgcgc                                                                                                                                       >  6:40295/1‑149 (MQ=255)
 cTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGcc                                                                                                                                      >  3:162645/1‑149 (MQ=255)
    aGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGCCCGGCCAGCAGGTCGCTctgga                                                                                                                                     >  4:152646/1‑143 (MQ=255)
    aGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGCCCGGCCAGCAGGTCGCTctgga                                                                                                                                     <  3:152646/147‑5 (MQ=255)
      cGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGc                                                                                                                                 <  8:50022/149‑1 (MQ=255)
       gAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCGGGACCACGCCATGGACAGCCGACAGTACACCTTCGTCATCAACGTGACGGTTAACTTGAAGAGCGCCCTGCTGGCCCGGCGCTAGCCGGac                                                                                                                                  >  8:148807/1‑146 (MQ=255)
        aaGCCGTGCAAGCGGCCGAGTTCCAGCCAGCCGTGCCGGTGCCTCCGCAGCGCCTGGAGGAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGGCGGAGCTg                                                                                                                               <  4:162645/149‑1 (MQ=255)
         aGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAATGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGc                                                                                                                              <  5:40295/149‑1 (MQ=255)
             cTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGCGCTGCAGa                                                                                                                           >  5:168619/1‑148 (MQ=255)
             cTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGAt                                                                                                                          <  1:255654/149‑1 (MQ=255)
                cAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCaa                                                                                                                       <  3:66194/149‑1 (MQ=255)
                cAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCaa                                                                                                                       <  3:70317/149‑1 (MQ=255)
                 aaCCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGc                                                                                                                                       <  8:63915/132‑1 (MQ=255)
                 aaCCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGc                                                                                                                                       >  7:63915/1‑132 (MQ=255)
                  aCCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACg                                                                                                                     >  2:16038/1‑149 (MQ=255)
                       ccGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGAt                                                                                                                >  4:289456/1‑149 (MQ=255)
                               cagccagcCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGCCCGGCCAGCAGGTCGCTc                                                                                                                                         >  8:208275/1‑116 (MQ=255)
                               cagccagcCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGCCCGGCCAGCAGGTCGCTc                                                                                                                                         <  7:208275/116‑1 (MQ=255)
                                agccagccGTGCCGCTGCCTCCGCACCGCCTCGAACAGGCCAAGGACAGCGGCCATTACACCTTAGTCATAAACCTGCCGGTTAACTTCCAGAGCCACCTGCTGGCCGCGCGCTCGCACGAGCTGCAGAACAACGTCGAAGCATCGGc                                                                                                        >  8:240337/1‑148 (MQ=255)
                                    agccGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGa                                                                                                   <  1:65357/149‑1 (MQ=255)
                                    agccGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGa                                                                                                   <  3:130170/149‑1 (MQ=255)
                                        gTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGcc                                                                                                >  2:289236/1‑148 (MQ=255)
                                         tGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCaa                                                                                              <  2:192293/149‑1 (MQ=255)
                                         tGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCaa                                                                                              <  1:289236/149‑1 (MQ=255)
                                                 gctacGCAGCGCCTGGACCAGGCCATGGACAGCGGACAGTACACGTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCGGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCa                                                                                       <  7:240337/144‑1 (MQ=255)
                                                  cTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATg                                                                                     <  8:211695/149‑1 (MQ=255)
                                                   tCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCGGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATgg                                                                                    >  6:179054/1‑149 (MQ=255)
                                                     cGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGAAGCTACGGCCATGAGCCAAGCGTTCATGGgc                                                                                  <  1:26500/149‑1 (MQ=255)
                                                           gcCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGc                                                                            >  5:83808/1‑149 (MQ=255)
                                                           gcCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGc                                                                            <  3:289456/149‑1 (MQ=255)
                                                            ccTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGc                                                                                                 <  5:215852/127‑1 (MQ=255)
                                                            ccTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGc                                                                                                 >  6:215852/1‑127 (MQ=255)
                                                                gACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACAt                                                                       >  3:190696/1‑149 (MQ=255)
                                                                 aCCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATc                                                                      >  4:191977/1‑149 (MQ=255)
                                                                     ggCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGcc                                                                  <  1:150884/149‑1 (MQ=255)
                                                                      gCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCg                                                                 >  1:235344/1‑149 (MQ=255)
                                                                       ccATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCTTGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCg                                                                 >  5:98371/1‑148 (MQ=255)
                                                                          tGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATc                                                             >  5:195092/1‑149 (MQ=255)
                                                                             aCAGCGGCCGGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTc                                                          <  5:179054/149‑1 (MQ=255)
                                                                             aCAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTc                                                          <  6:195092/149‑1 (MQ=255)
                                                                                             cTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTc                                           >  8:289838/1‑148 (MQ=255)
                                                                                             cTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTc                                           >  3:236141/1‑148 (MQ=255)
                                                                                                 gTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTa                                      <  6:83808/149‑1 (MQ=255)
                                                                                                  tcatcaACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGCGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGATCGACTa                                      >  7:107194/1‑148 (MQ=255)
                                                                                                     tcaACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTAcagc                                  >  8:212868/1‑149 (MQ=255)
                                                                                                       aaCGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTAcagc                                  >  3:23555/1‑147 (MQ=255)
                                                                                                           tGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTACAGCCAGCGt                            >  6:227620/1‑149 (MQ=255)
                                                                                                                   aaCTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAAc                      >  5:15112/1‑147 (MQ=255)
                                                                                                                   aaCTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAAc                      >  3:102064/1‑147 (MQ=255)
                                                                                                                    aCTTTCAGAGCGAGCTGCTGGCCGGGCGCTCGGCGGAGCTGCAGATGAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAACGa                    <  6:309434/148‑1 (MQ=255)
                                                                                                                    aCTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCTTGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAACGAg                   <  6:98371/149‑1 (MQ=255)
                                                                                                                         gcgagCGCCCGGCCAGCAGGTCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAACGAGCAAAg              >  6:122446/3‑149 (MQ=255)
                                                                                                                         cAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAACGAGCaaa               <  1:16038/148‑1 (MQ=255)
                                                                                                                           gagCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAACGAGCAAAGcc            <  4:236141/149‑1 (MQ=255)
                                                                                                                                 ccTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAACGAGCAAAGCCCGGTGc      <  7:212868/149‑1 (MQ=255)
                                                                                                                                     ctgGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAACGAGCAAAGCCCGGTGCTGAt  <  2:235344/149‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                            
GCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGTACACCTTCGTCATCAACGTGCCGGTTAACTTCCAGAGCGACCTGCTGGCCGGGCGCTCGCCGGAGCTGCAGATCAACGTCGATGCTACGGCCATGAGCCAAGCGTTCATGGGCGCCGGCTACATCGGCCGCATCTTCGAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAACGAGCAAAGCCCGGTGCTGAT  >  NC_002947/5940356‑5940637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: