| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,967,628 | A→C | 6.9% | L22R (CTG→CGG) | amtB ← | ammonium transporter AmtB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,967,628 | 0 | A | C | 6.9% | 257.8 / 8.6 | 87 | L22R (CTG→CGG) | amtB | ammonium transporter AmtB |
| Reads supporting (aligned to +/- strand): ref base A (40/41); new base C (3/3); total (43/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.23e-01 | |||||||||||
ATCACCGACAGCACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTCGGTATCGGTTTCGCCGGTACGGAT > NC_002947/5967484‑5967774 | atcaCCGACAGCACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCCGGGc > 6:219749/1‑149 (MQ=255)atcaCCGACAGCACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAggg > 1:289166/1‑148 (MQ=255) tcaCCGACAGCACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGc > 5:99246/1‑148 (MQ=255) tcaCCGACAGCACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGc > 6:276399/1‑148 (MQ=255) ccGACAGCACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAgg > 3:273032/1‑143 (MQ=255) ccGACAGCACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAgg < 4:273032/143‑1 (MQ=255) ccGACAGCACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGc < 4:37639/149‑1 (MQ=255) gACAGCACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGccc < 2:289166/149‑1 (MQ=255) aGCACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCggg < 8:175789/149‑1 (MQ=255) gCACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCggg > 7:246926/1‑148 (MQ=255) cACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCCGGGCTTGCCCTGGCa < 5:219749/149‑1 (MQ=255) aCGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCAt > 4:217771/1‑149 (MQ=255) cGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCCGGGCTTGCCCTGGCaga < 5:121130/149‑3 (MQ=255) tCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTAc > 7:72686/1‑148 (MQ=255) ttGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAg > 7:201545/1‑149 (MQ=255) ttGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAg > 4:216837/1‑149 (MQ=255) tGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAgg > 8:6769/1‑149 (MQ=255) ggATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGTATAGTCATGAACAGCACCAGCGCCGTTGCTGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGa < 3:226726/146‑1 (MQ=255) ggATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAg < 5:257042/147‑1 (MQ=255) gCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAAt < 3:216837/149‑1 (MQ=255) aCCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAg < 2:154333/149‑1 (MQ=255) aCCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAg > 2:3607/1‑149 (MQ=255) cATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAggg < 3:217771/149‑1 (MQ=255) aTGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGc < 4:164246/149‑1 (MQ=255) gccgccATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCCGGGCTTGCCCTGGCaga > 8:65623/1‑128 (MQ=255) gccgccATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTc > 1:294145/1‑149 (MQ=255) ccATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAg < 5:32021/149‑1 (MQ=255) gAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTg < 7:6769/149‑1 (MQ=255) aaCAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGc > 8:167915/1‑149 (MQ=255) aCAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGc > 6:49233/1‑148 (MQ=255) aCAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGc > 5:186785/1‑148 (MQ=255) aGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTAGGAGCCCtattgt < 6:99246/149‑6 (MQ=255) ggtccAAGCCCGGAATAGTCATGAACTGCACGAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGGGCTGGGGCAGCTTCCTCTGCCAGGGCAAGGCCGGGCATTACGAGGTACATTAGGGCTCCTAGCCCTGCGATc < 2:294145/146‑1 (MQ=255) ccAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTa < 7:167915/149‑1 (MQ=255) ccAAGCCCGGAATAGTCATGAACAGCACAAGCGCCGTTGCCGTCAGCATACAGGCGGTGTCGCCGGAATTAAGAGCTGGGTCAGCTTCCTATGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCATAGCCCTGCGATCTTa > 1:159172/1‑149 (MQ=255) gCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCa < 5:276399/149‑1 (MQ=255) tAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCAtg < 5:49233/149‑1 (MQ=255) tCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCAtgttg > 5:156017/1‑149 (MQ=255) tCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCAtgttg > 7:157778/1‑149 (MQ=255) tCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCAtgttg > 2:8236/1‑149 (MQ=255) tGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCGTAGCCCTGCGATCTTACGCAGAGTCATgttgtt < 5:75321/148‑1 (MQ=255) tGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATgttgtt > 6:75321/1‑148 (MQ=255) tGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGttt > 3:300487/1‑149 (MQ=255) aCAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTtct > 8:32918/1‑149 (MQ=255) aCAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTtct > 8:37731/1‑149 (MQ=255) aGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTcc > 8:54485/1‑149 (MQ=255) ccAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTggg < 8:246926/149‑1 (MQ=255) aGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGc < 7:37731/149‑1 (MQ=255) aGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGc < 7:32918/149‑1 (MQ=255) cgcCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGt < 1:16252/149‑1 (MQ=255) ccGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTg < 8:72686/149‑1 (MQ=255) cGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGTGACAATAGTGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTgg < 2:159172/149‑1 (MQ=255) cGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTgg > 3:61808/1‑149 (MQ=255) cGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTgg > 7:180204/1‑149 (MQ=255) cGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTg > 3:64793/1‑149 (MQ=255) cGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTg < 1:3607/149‑1 (MQ=255) ggTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTgg < 3:143936/149‑1 (MQ=255) gTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGt < 8:157778/149‑1 (MQ=255) aGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTCTTCTCCTGGGGCGTTGGGTTTGGTGa < 1:8236/148‑1 (MQ=255) cATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATgttgtt < 6:213064/120‑1 (MQ=255) cATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATgttgtt > 5:213064/1‑120 (MQ=255) cATACAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCACGACCGCGCATTACGAGGGACAATAGGGCTCCTAGCCATGCGATCTTACGCAGAGTCAtgttggt > 5:213067/1‑118 (MQ=255) gCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGtttt < 4:155095/115‑1 (MQ=255) tCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGa < 5:226093/133‑1 (MQ=255) tCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGa > 6:226093/1‑133 (MQ=255) gCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTg > 6:165202/1‑121 (MQ=255) ccGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTc > 1:244856/1‑96 (MQ=255) ccGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTc < 2:244856/96‑1 (MQ=255) ggAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATc < 8:180204/149‑1 (MQ=255) aGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTCg < 6:156017/148‑1 (MQ=255) gcTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGtt > 3:81251/1‑107 (MQ=255) gcTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGtt < 4:81251/107‑1 (MQ=255) cTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTCGGTATc < 4:300487/149‑1 (MQ=255) cTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTCGGTATc < 8:201545/149‑1 (MQ=255) ggCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTCGGTATCGGtt < 4:61808/149‑1 (MQ=255) gCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCtttttt > 7:158132/1‑121 (MQ=255) gCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCtttttt < 8:158132/121‑1 (MQ=255) gCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTCGGTATCGGttt > 8:282829/1‑149 (MQ=255) cAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTCGGTATCGGTTTc < 7:54485/149‑1 (MQ=255) tcgtaatGCCCGGGCTTGCCCTGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATc > 3:117150/7‑128 (MQ=255) tcgtaatGCCCGGGCTTGCCCTGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATc < 4:117150/122‑1 (MQ=255) ctctGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTCGGTATCGGTTTCGCCGGTa > 6:65143/1‑149 (MQ=255) tctGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTCGGTATCGGTTTCGCCGGTAc > 1:180797/1‑149 (MQ=255) tctGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTAGGTa > 8:257468/1‑133 (MQ=255) tGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTCGGTATCGGTTTCGCCGGTAc < 4:64793/147‑1 (MQ=255) ccAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTCGGTATCGGTTTCGCCGGTACGGAt > 1:214528/1‑149 (MQ=255) ccAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCATGCGATCTTACGCAGAGTAATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGATTAGATCGCGTCGGTATCGGTTTCGCAGGTACGGAt > 7:49195/1‑149 (MQ=255) | ATCACCGACAGCACGTTCTTGGATCGCACCATGCCGCCATAGAACAGGGCCAAGCCCGGAATAGTCATGAACAGCACCAGCGCCGTTGCGGTCAGCATCCAGGCGGTGTCGCCGGAATTAAGCGCTGGGGCAGCTTCCTCTGCCAGGGCAAGCCCGGGCATTACGAGGGACAATAGGGCTCCTAGCCCTGCGATCTTACGCAGAGTCATGTTGTTTTCTCCTGGGGCGTTGGGTTTGGTGAGGCTTTTTTGCTGCTTAGATCGCGTCGGTATCGGTTTCGCCGGTACGGAT > NC_002947/5967484‑5967774 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |