Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,050,226 | T→C | 8.0% | I363T (ATC→ACC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,050,226 | 0 | T | C | 8.0% | 139.8 / 2.9 | 51 | I363T (ATC→ACC) | spoT | bifunctional (p)ppGpp synthase/hydrolase |
Reads supporting (aligned to +/- strand): ref base T (22/24); new base C (2/2); total (25/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.54e-01 |
TGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAGTTGCCCAAAGGCTCCACGGCCGTC > NC_002947/6050085‑6050362 | tGCCCATCGAAATCCAGCTTCGCCCCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GATACCCTT‑‑Gac < 2:155992/149‑2 (MQ=255) ccATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATTGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTg > 6:289623/1‑149 (MQ=255) ccATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTg < 1:122898/149‑1 (MQ=255) cATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTg > 6:143831/1‑148 (MQ=255) aTCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGAGGGCCAACAACGGCATCGCCGCGCACTGGCTGGACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTgca < 5:309372/149‑1 (MQ=255) aTCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTTTCCTT‑‑GA‑ACTGCAGCAACg > 3:63959/1‑149 (MQ=255) tCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGt < 5:143831/149‑1 (MQ=255) cAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACCACCGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCACCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTg < 8:140142/148‑1 (MQ=255) ttCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCgg > 2:76190/1‑148 (MQ=255) gCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAAc > 4:279119/1‑149 (MQ=255) gAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCAt < 2:65950/149‑1 (MQ=255) agaTTGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCgag < 5:289623/149‑1 (MQ=255) agaTGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATc > 1:229053/1‑146 (MQ=255) gaTGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGaa > 6:69827/1‑139 (MQ=255) gaTGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGaa < 5:69827/139‑1 (MQ=255) aTGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCCCGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGagag > 1:42225/1‑149 (MQ=255) aTGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATc < 4:196476/144‑1 (MQ=255) aTGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATc > 3:196476/1‑144 (MQ=255) tGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGCTGGATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCgaga < 1:76190/148‑1 (MQ=255) gacaacaaCGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCg < 3:277809/146‑1 (MQ=255) gCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCg < 1:86162/148‑1 (MQ=255) ccAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGt > 8:4456/1‑148 (MQ=255) caacaaCGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTg > 8:103972/1‑148 (MQ=255) caacaaCGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTg > 8:236615/1‑148 (MQ=255) aacaacGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCaa < 3:47438/122‑1 (MQ=255) aacaacGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCaa > 4:47438/1‑122 (MQ=255) aacaacGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTg > 7:240924/1‑147 (MQ=255) acaacGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTg > 2:20817/1‑146 (MQ=255) cGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCg < 7:4456/149‑1 (MQ=255) cATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGATGGG‑GGGGGACTTGGGAGGATACAGCAACGTCCCGGCAACTCACTGGAATTAATCGAGAGAGTGAATATc > 1:253405/1‑148 (MQ=255) aTCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCt < 3:71781/149‑1 (MQ=255) aGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACgtg < 8:279609/149‑1 (MQ=255) tCAATCGAGGAGGAGGAGCGCTAGGGCAGCCACGGGCGCTCGCGCCAGTGGGTCATG‑GGTATGCTT‑‑GA‑ACTTCAGCAACGTGGCGGCATCTCGCTGTAATTCATCGAGAGCGTGATGATCGACCTGTTCCCGGACGAGGTCTACgtgt < 8:240924/148‑1 (MQ=255) tCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGtt < 7:236615/149‑1 (MQ=255) aaaCGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCa > 2:279031/1‑149 (MQ=255) gacgacgaGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGcc > 4:122357/1‑149 (MQ=255) gacgacgaGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGcc > 4:19408/1‑149 (MQ=255) aaGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCACCTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGATCACGCCCAAAGGCCGGATCAt > 3:17894/1‑149 (MQ=255) aGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATg < 1:20817/149‑1 (MQ=255) aGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATg < 7:103972/149‑1 (MQ=255) ggCAGTCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGa > 7:96429/1‑149 (MQ=255) ggCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATg > 4:35196/1‑147 (MQ=255) cgcgcCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAGTTGCCCAAAgg < 3:122357/149‑1 (MQ=255) cgcgcCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAGTTGCCCAAAgg < 2:229053/149‑1 (MQ=255) ctgcagttCAAG‑GATACCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAGTTGCCCAAAGGCTCCACGGc > 2:15622/8‑149 (MQ=255) tGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAGTTGCCCAAAGGCTCCACGGCCgg < 2:253405/149‑2 (MQ=255) tGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAGTTGCCCAAAGGCTCCACGGCCGt < 8:96429/149‑1 (MQ=255) cagttCAAG‑GATACCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAGTTGCCCAAAGGCTCCACGGcc < 1:15622/143‑1 (MQ=255) gttCAAG‑GATACCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAGTTGCCCAAAGGCTCCACGGCCGTc > 7:218987/3‑148 (MQ=255) aaG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATg < 2:82760/117‑1 (MQ=255) aaG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATg > 1:82760/1‑117 (MQ=255) | TGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAG‑GGTATCCTT‑‑GA‑ACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAGTTGCCCAAAGGCTCCACGGCCGTC > NC_002947/6050085‑6050362 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |