Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,068,518 | G→T | 7.0% | E387D (GAG→GAT) | PP_5322 → | metal ion transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,068,518 | 0 | G | T | 7.0% | 182.6 / 2.8 | 57 | E387D (GAG→GAT) | PP_5322 | metal ion transporter |
Reads supporting (aligned to +/- strand): ref base G (24/29); new base T (2/2); total (26/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 |
ATCGGCTACCTGACCATGGAAGACGTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTGGAGGTCGAAGGGCTGCGCATCATCATCAAGAAGATGAAAGGCCCCAAGA > NC_002947/6068375‑6068666 | aTCGGCTACCTGACCATGGAAGACGTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCct > 6:264296/1‑149 (MQ=255) cGGCTACCTGACCATGGAAGACGTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCctgc > 4:171075/1‑149 (MQ=255) ggCTACCTGACCATGGAAGACGTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCctgct < 5:293073/149‑1 (MQ=255) ggCTACCTGACCATGGAAGACGTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCctgct > 4:279347/1‑149 (MQ=255) ggCTACCTGACCATGGAAGACGTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCctgc < 3:234162/148‑1 (MQ=255) cTACCTGACCATGGAAGACGTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTgg < 3:171075/149‑1 (MQ=255) ccTGACCATGGAAGACGTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTa > 8:77652/1‑149 (MQ=255) aCCATGGAAGACGTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCg < 3:279347/148‑1 (MQ=255) ccATGGAAGACGTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGAc < 6:44848/149‑1 (MQ=255) ccATGGAAGACGTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGAc < 4:59023/149‑1 (MQ=255) gTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACAt > 1:214058/1‑149 (MQ=255) tGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGATGGGTATCGACCTTGACCACATc > 1:100774/1‑149 (MQ=255) ggAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGATACCCAGCAGGCGCTCGACCTTGAAca > 2:166762/1‑141 (MQ=38) ggAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGATACCCAGCAGGCGCTCGACCTTGAAca < 1:166762/141‑1 (MQ=38) ggAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAgg < 8:70652/149‑1 (MQ=255) gAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGc < 6:194150/149‑1 (MQ=255) tGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGa > 1:11717/1‑148 (MQ=255) tGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTg < 2:96067/129‑1 (MQ=255) tGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTg > 1:96067/1‑129 (MQ=255) ggCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGc > 7:238001/1‑149 (MQ=255) gACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCgg < 2:214058/149‑1 (MQ=255) ccAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGATACCCAGCAGGCGCTCGACCTTGaac > 7:121034/1‑117 (MQ=37) ccAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGATACCCAGCAGGCGCTCGACCTTGaac < 8:121034/119‑3 (MQ=37) aGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGCGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATc < 5:216688/149‑1 (MQ=255) aCGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTAc < 7:77652/149‑1 (MQ=255) gAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACga > 5:20738/1‑149 (MQ=255) gAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCCGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACga < 5:264296/149‑1 (MQ=255) gCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGa > 7:111429/1‑102 (MQ=255) gCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGa < 8:111429/102‑1 (MQ=255) cACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGAc > 6:306973/1‑149 (MQ=255) aCCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACg < 2:11717/149‑1 (MQ=255) cGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCt > 2:35196/1‑149 (MQ=255) aaGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGTTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCaa < 2:100774/149‑1 (MQ=255) cGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGcgcg > 4:32036/1‑149 (MQ=255) cGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGTGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGcc < 7:280266/149‑1 (MQ=255) tGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCt > 6:107540/1‑148 (MQ=255) gCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTgaa < 3:32036/149‑1 (MQ=255) gCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAagaaga < 5:306973/146‑1 (MQ=255) ccTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGaa < 2:2265/149‑1 (MQ=255) cTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAg > 2:172900/1‑149 (MQ=255) aGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTg < 7:142529/149‑1 (MQ=255) gCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTgg < 8:238001/149‑1 (MQ=255) cgggTGCGTGGCGAGACCCCACTGTTCAATCTCGAGCGCCTGCTTGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTGGAGGTAGAATGGCt < 8:33310/147‑1 (MQ=255) gTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCt < 1:2226/114‑1 (MQ=255) gTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCt > 2:2226/1‑114 (MQ=255) gTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGGGTGCCTGAAGAAGAGGAAGTGCTGGAGGTCGAAGGGCTGCGcatc < 1:141918/149‑1 (MQ=255) ggCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTgaagaa < 1:135574/114‑1 (MQ=255) ggCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTgaagaa > 2:135574/1‑114 (MQ=255) gCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTGGAGGTCGAAGGGCTGCGcatcatc < 6:20738/149‑1 (MQ=255) acCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTGGAGGTCGAAGGGCTGCGCatcatcatc > 3:124846/1‑147 (MQ=255) cccACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTGGAGGTCGAAGGGCTGCGCATCATCATCaag > 5:212888/1‑148 (MQ=255) cccACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTGGAGGTCGAAGGGCTGCGCATCATCATCaag > 4:87651/1‑148 (MQ=255) cccACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACAACGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTGGAGGTCGAAGGGCTGCGCATCATCATCaag > 1:226294/1‑148 (MQ=255) aaGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTGGAg > 4:180664/1‑111 (MQ=255) aaGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTGGAg < 3:180664/111‑1 (MQ=255) gTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGaa < 1:72388/99‑1 (MQ=255) gTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGaa > 2:72388/1‑99 (MQ=255) gcgcCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTGGAGGTCGAAGGGCTGCGCATCATCATCAAGAAGATGAAAGGcccc > 4:115781/1‑145 (MQ=255) gcgcCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTGGAGGTCGAAGGGCTGCGCATCATCATCAAGAAGATGAAAGGCCCCAAGa < 1:172900/149‑1 (MQ=255) | ATCGGCTACCTGACCATGGAAGACGTGCTGGAAGTGCTGGTAGGCGACATCCAGGACGAGCACCGCAAGACCGAGCGTGGCATTCTTGCCTACCAGCCGGGCAAGCTGCTGGTGCGTGGCGACACCCCACTGTTCAAGGTCGAGCGCCTGCTGGGTATCGACCTTGACCACATCGAGGCCGAAACCCTGGCCGGGTTGATCTACGAGACGCTCAAGCGCGTGCCTGAAGAAGAGGAAGTGCTGGAGGTCGAAGGGCTGCGCATCATCATCAAGAAGATGAAAGGCCCCAAGA > NC_002947/6068375‑6068666 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |