Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 635,840 G→T 7.1% E22* (GAA→TAA) ‡ mpl → UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947635,8400GT 7.1% 176.0 / 3.4 56E22* (GAA→TAA) ‡mplUDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
Reads supporting (aligned to +/- strand):  ref base G (25/27);  new base T (2/2);  total (27/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.60e-01

CCAGGGGCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCGGCAACGC  >  NC_002947/635697‑635985
                                                                                                                                               |                                                                                                                                                  
ccAGGGGCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACtt                                                                                                                                               >  1:170530/1‑149 (MQ=255)
 cAGGGGCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTg                                                                                                                                              <  5:83811/149‑1 (MQ=255)
 cAGGGGCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTg                                                                                                                                              >  1:77171/1‑149 (MQ=255)
       cGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCAcc                                                                                                                                        <  4:24415/149‑1 (MQ=255)
        gACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGTTCCTTGGCCagca                                                                                                                                       <  4:90427/149‑4 (MQ=255)
        gACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACcg                                                                                                                                       >  8:61542/1‑149 (MQ=255)
             aGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCa                                                                                                                                  >  6:125384/1‑149 (MQ=255)
                gAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCg                                                                                                                               >  2:80433/1‑149 (MQ=255)
                 aaaCAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCgg                                                                                                                              <  3:203548/149‑1 (MQ=255)
                 aaaCAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCgg                                                                                                                              <  6:192411/149‑1 (MQ=255)
                       cGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGa                                                                                                                        >  2:71618/1‑149 (MQ=255)
                       cGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGa                                                                                                                        <  2:170530/149‑1 (MQ=255)
                        gggTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGAc                                                                                                                       >  3:89987/1‑149 (MQ=255)
                                       cgcCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATccc                                                                                                        <  2:246013/149‑1 (MQ=255)
                                          ccTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATccccc                                                                                                      >  3:69729/1‑148 (MQ=255)
                                               gCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAg                                                                                                >  3:67667/1‑149 (MQ=255)
                                                 tACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGAACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCATCGTCTATCGCCCGATGAGCa                                                                                              >  8:225554/1‑149 (MQ=255)
                                                   cccTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCAcc                                                                                            <  6:254534/149‑1 (MQ=255)
                                                    ccTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGa                                                                                                 >  6:244993/1‑143 (MQ=255)
                                                    ccTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGa                                                                                                 <  5:244993/143‑1 (MQ=255)
                                                            gATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGaa                                                                                   <  2:236837/149‑1 (MQ=255)
                                                            gATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGaa                                                                                   <  2:77171/149‑1 (MQ=255)
                                                               gTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATc                                                                                                          >  3:235690/1‑123 (MQ=255)
                                                               gTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATc                                                                                                          <  4:235690/123‑1 (MQ=255)
                                                                    gCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAgg                                                                            <  7:61542/148‑1 (MQ=255)
                                                                    gCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAgg                                                                            <  1:159227/148‑1 (MQ=255)
                                                                    gCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAgg                                                                            <  1:121853/148‑1 (MQ=255)
                                                                                     tatTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAg                                                         >  1:138184/1‑149 (MQ=255)
                                                                                      atTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCAGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAgg                                                        >  5:122143/1‑149 (MQ=255)
                                                                                       ttCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGc                                                       >  4:28421/1‑149 (MQ=255)
                                                                                          acaTTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTAt                                                    <  2:138184/149‑1 (MQ=255)
                                                                                            aTTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGa                                                  <  4:69729/149‑1 (MQ=255)
                                                                                             ttCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGAc                                                 >  3:123984/1‑149 (MQ=255)
                                                                                              tctcGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGAcc                                                >  2:293676/1‑149 (MQ=255)
                                                                                                  ggTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCgg                                             <  5:125384/148‑1 (MQ=255)
                                                                                                           ggCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGa                                   <  3:28421/149‑1 (MQ=255)
                                                                                                            gCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAgg                                                                                                                                                    <  6:146599/36‑1 (MQ=255)
                                                                                                            gCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAgg                                                                                                                                                    >  5:146599/1‑36 (MQ=255)
                                                                                                                tttCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGCCTATGACCCGGCCCAGCTGGATCCgc                              >  5:271229/1‑148 (MQ=255)
                                                                                                                   cATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGgcg                            <  4:67667/148‑1 (MQ=255)
                                                                                                                    aTGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGgcgc                           <  4:89987/148‑1 (MQ=255)
                                                                                                                     tGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGCATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCa                         <  1:71618/149‑1 (MQ=255)
                                                                                                                      gggTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTCTCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGgcgc                           >  5:86171/1‑146 (MQ=255)
                                                                                                                      gggTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGgcgc                           >  6:19394/1‑146 (MQ=255)
                                                                                                                      gggTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCa                         <  5:19394/148‑1 (MQ=255)
                                                                                                                       ggTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAg                        <  3:54718/148‑1 (MQ=255)
                                                                                                                        gTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGc                                                                                 >  6:105644/1‑91 (MQ=255)
                                                                                                                        gTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGc                                                                                 <  5:105644/91‑1 (MQ=255)
                                                                                                                            gCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCtgg                  >  5:91277/1‑149 (MQ=255)
                                                                                                                               ggCGGGGCTGGCCAAGGAACTTGGCCACCTCGTCAACGGCTCTGCCGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCCAGTCTATGACCCGGCCCATCTGGCTCCGGCGCCAGACCtggtgg               <  2:247023/149‑1 (MQ=255)
                                                                                                                                gCGGTGGTGGCCAAGGAACTTGGCCAACGGGTCACCGGGTCTGACCCCAAACGCTATCCCCCGATGAGCACCCATCTCGAAGCCCATGGTATCTAAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCtggtg                <  1:80433/148‑1 (MQ=255)
                                                                                                                                  ggTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCa            >  6:142947/1‑149 (MQ=255)
                                                                                                                                   gcggtGGCCAAGTTCCTTGGCCAGCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGgc                             <  5:280572/127‑1 (MQ=255)
                                                                                                                                   gcggtGGCCAAGTTCCTTGGCCAGCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGgc                             >  6:280572/5‑131 (MQ=255)
                                                                                                                                     ggtGGCCAAGTTCCTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGTCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCg         >  4:243231/3‑149 (MQ=255)
                                                                                                                                         gCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCGGc       <  5:142947/147‑1 (MQ=255)
                                                                                                                                         gCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCGGCaa     >  1:278580/1‑149 (MQ=255)
                                                                                                                                             aGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCAACGGCAACGc  >  4:97903/1‑148 (MQ=255)
                                                                                                                                               |                                                                                                                                                  
CCAGGGGCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCGGCAACGC  >  NC_002947/635697‑635985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: