Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 853,762 | G→A | 8.7% | R62H (CGT→CAT) ‡ | prmC → | release factor‑(glutamine‑N5) methyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 853,762 | 0 | G | A | 8.7% | 158.2 / 4.5 | 57 | R62H (CGT→CAT) ‡ | prmC | release factor‑(glutamine‑N5) methyltransferase |
Reads supporting (aligned to +/- strand): ref base G (26/26); new base A (2/3); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.65e-01 |
AATCGCCCACTGAGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAGCTGCTGGTCGAGACGGCGCTTGAACTGCAACCCGCTTCGCCCGCCAAG > NC_002947/853621‑853910 | aaTCGCCCACTGAGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTggcggc < 6:298583/149‑1 (MQ=255) aaTCGCCCACTGAGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTggcggc > 6:87287/1‑149 (MQ=255) aaTCGCCCACTGAGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTggcg < 5:103641/147‑1 (MQ=255) ccACTGAGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCACGgcggcgcttca < 2:211180/149‑6 (MQ=255) ccACTGAGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCACGgcggcgcttc > 1:304762/1‑144 (MQ=255) ccACTGAGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCACGgcggcgcttc > 5:29742/1‑144 (MQ=255) ccACTGAGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCACGgcggcgcttc < 6:29742/148‑5 (MQ=255) ccACTGAGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCACGgcggcgcttc < 2:304762/148‑5 (MQ=255) aCTGAGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGt < 5:87287/149‑1 (MQ=255) cTGAGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATTGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTg < 5:73333/149‑1 (MQ=255) aGCGCCTGGATGCCGAACTGCTGCTGGCTGGGGCCATCGGTAAATCGCGCAGCTACCTGCATACGTGGCCCGAGCGTATTGTCAGCAGCTAAGATGCCGAGACCTATGCCGGCTACCTGATGCGCCGCCGTGGCGGCGAGCCAGTGGcc < 2:303771/149‑1 (MQ=255) aGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGc < 1:207993/148‑1 (MQ=255) cgcCTGGATGCCGCACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCta < 8:218117/149‑1 (MQ=255) cgacTGGATGCCTAACTGGTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTAGCTTCATACCTGGCCCGTGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTTGCCt < 6:216143/145‑1 (MQ=255) gCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCGGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTgg > 2:223651/1‑149 (MQ=255) gCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTgg > 3:184776/1‑149 (MQ=255) cGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGTAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGc > 1:96978/1‑149 (MQ=255) cGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGc > 1:283926/1‑149 (MQ=255) ctgctgGGTGCGGCCAGCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGGCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAggg < 2:226444/149‑1 (MQ=255) ctgctgGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAg > 6:174295/1‑124 (MQ=255) ctgctgGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAg < 5:174295/124‑1 (MQ=255) tgctgGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGc > 5:86638/1‑149 (MQ=255) tgctgGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGc > 5:31868/1‑149 (MQ=255) tgctgGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGc > 1:148258/1‑149 (MQ=255) ggctgCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCt > 3:177819/1‑149 (MQ=255) cGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGa < 7:254480/147‑1 (MQ=255) ggCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGa < 4:184776/149‑1 (MQ=255) ccATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATc < 2:96978/149‑1 (MQ=255) aTCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGa > 3:173827/1‑149 (MQ=255) tCGGTAAATCGCGCGGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGAc < 1:223651/149‑1 (MQ=255) gTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTg < 8:68510/136‑1 (MQ=255) gTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTg > 7:68510/1‑136 (MQ=255) gTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTg > 4:297599/1‑149 (MQ=255) tAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTgg < 4:173827/149‑1 (MQ=255) aCCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAgg > 3:273678/1‑114 (MQ=255) aCCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAgg < 4:273678/114‑1 (MQ=255) aTACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGcgccgc < 5:219075/141‑1 (MQ=255) aTACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGcgccgc > 6:219075/1‑141 (MQ=255) cTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGaa > 2:308358/1‑114 (MQ=255) cTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGaa < 1:308358/114‑1 (MQ=255) ccGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCgg > 5:26299/1‑149 (MQ=255) cGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGc < 2:148258/149‑1 (MQ=255) gCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCg > 4:85658/1‑148 (MQ=255) cGTATTGGCCTCAGCTAAGAGGCCGAGACCTATGCCGGCTACCTGACGCGCCGCCGGGGCGGCGAGCCAGTGGCATATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCAGCGGCCGGa < 6:31868/149‑1 (MQ=255) aTTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATAc > 1:68754/1‑149 (MQ=255) gTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCTGCCGGATAcc > 1:105304/1‑147 (MQ=255) cagcagCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAgc < 5:155874/149‑1 (MQ=255) gcagcGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAgctg > 6:29828/1‑149 (MQ=255) cggcGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAgctgc > 3:263278/3‑149 (MQ=255) cagcGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAgctgc < 3:85658/149‑1 (MQ=255) aaGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAGCTGCTGGTc < 3:223821/149‑1 (MQ=255) gATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTTCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAGCTGCTGGTCga < 2:234227/149‑1 (MQ=255) tGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGTGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAGCTGCTGGTCgaga < 2:20952/149‑1 (MQ=255) gCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAGCTGCTGGTCGAGAc > 2:284616/1‑149 (MQ=255) cGAGACCTATGCAGGCTACCTGAAGCGCAGCCGTGTCCGCGAGCAAGTGGCATATATCCTTGGGCTGCAGGGCTTCTCGAAGATCGACCTGGAGGTCGCGCCGCATACCCTCATCCCGCGGCAGGAAACCGAGCTGCTGGTCGAGACgg > 8:31644/1‑149 (MQ=255) gagaCCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAGCTGCTGGTCGAGACGgc > 3:239762/1‑149 (MQ=255) gAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAGCTGCTGGTCGAGACGGCGCTTGAACTGCAACCCGCtt > 8:232632/1‑149 (MQ=255) gTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAGCTGCTGGTCGAGACGGCGCTTGAACTGCAACCCGCTTCGCCCGCCAAg < 6:86638/149‑1 (MQ=255) | AATCGCCCACTGAGCGCCTGGATGCCGAACTGCTGCTGGCTGCGGCCATCGGTAAATCGCGCAGCTACCTGCATACCTGGCCCGAGCGTATTGTCAGCAGCGAAGATGCCGAGACCTATGCCGGCTACCTGAAGCGCCGCCGTGGCGGCGAGCCAGTGGCCTATATCCTTGGGCTGCAGGGCTTCTGGAAGATCGACCTGGAGGTCGCGCCGCATACCCTGATCCCGCGGCCGGATACCGAGCTGCTGGTCGAGACGGCGCTTGAACTGCAACCCGCTTCGCCCGCCAAG > NC_002947/853621‑853910 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |