Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 124,972 | C→G | 10.7% | Q48H (CAG→CAC) ‡ | PP_0119 ← | zinc uptake regulation protein Zur |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 124,972 | 0 | C | G | 10.7% | 164.5 / 10.0 | 56 | Q48H (CAG→CAC) ‡ | PP_0119 | zinc uptake regulation protein Zur |
Reads supporting (aligned to +/- strand): ref base C (27/23); new base G (2/4); total (29/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.14e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 |
AAGGCGTTCAGCGATGCGATGCGATGTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGTGAGGACGGTTGGCCAGCGGTGTGATGGACATGG > NC_002947/124826‑125117 | aaGGCGTTCAGCGATGCGATGCGATGTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGctct < 4:243278/148‑1 (MQ=255) aGGCGTTCAGCGATGCGATGCGATGTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGc < 1:169270/149‑1 (MQ=255) ggCGTTCAGCGATGCGATGCGATGTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGc < 4:185417/148‑1 (MQ=255) cAGCGATGCGATGCGATGTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCAGAGCcacaag < 7:49703/148‑3 (MQ=255) aGCGATGCGATGCGATGTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCAGAGCcacaagc < 6:39966/148‑4 (MQ=255) cgatgcgatgcgatgTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCATGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCt < 6:174207/149‑1 (MQ=255) tgcgatgcgatgTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCa < 4:41260/149‑1 (MQ=255) cgatgcgatgTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCAGAGCcacaag > 1:208415/1‑138 (MQ=255) cgatgcgatgTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCAGAGCcacaag < 2:208415/140‑3 (MQ=255) caatgcgatgTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAg < 7:277154/146‑1 (MQ=255) gatgcgatgTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCAGAGCcacaag < 5:186397/139‑3 (MQ=255) gatgcgatgTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCAGAGCcacaag > 6:186397/1‑137 (MQ=255) gcgatgTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCacac > 3:238519/1‑149 (MQ=255) tACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACggcggc > 3:2664/1‑149 (MQ=255) aCCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGgcggcg > 3:224233/1‑149 (MQ=255) cAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGgcggcg > 7:190488/1‑147 (MQ=255) cGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACAcc < 5:175305/122‑1 (MQ=255) cGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACAcc > 6:175305/1‑122 (MQ=255) cGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCt < 1:89120/149‑1 (MQ=255) gTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTg > 8:153225/1‑149 (MQ=255) gcagGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGgcgc < 4:2664/149‑1 (MQ=255) tCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTg > 7:67131/1‑149 (MQ=255) tCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTg > 3:186274/1‑149 (MQ=255) cAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGc > 2:101350/1‑149 (MQ=255) gcgcACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCgg < 5:139402/149‑1 (MQ=255) cgcACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCggg < 8:190488/149‑1 (MQ=255) cccGGGACCCCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGCGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCGCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTg < 8:67131/147‑1 (MQ=255) cACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTg < 4:224233/149‑1 (MQ=255) tACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACaa < 6:7405/149‑1 (MQ=255) gTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCGCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTc < 4:103920/149‑1 (MQ=255) gTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTc < 4:238519/149‑1 (MQ=255) gcggcgcggcgGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGc < 4:186274/149‑1 (MQ=255) ctaaCTGAGCAAAGCGAGGATGTCGTAGCCGCACAGTGGCTTGTGGCTCTGCCACACCAGCTACAGCACACGGCGGAGCAGTGCTGTCAGGCGCAGGCCCTGGCGGGTGAACAAGGCGTCGGCTTCAGCCAGTGCGATGTGTACGCAAt > 8:187122/4‑149 (MQ=255) tCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATg > 4:42733/1‑149 (MQ=255) cACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAg < 4:300720/113‑1 (MQ=255) cACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAg > 3:300720/1‑113 (MQ=255) aCTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATgg > 5:284983/1‑148 (MQ=255) tGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTAc > 8:188846/1‑139 (MQ=255) tGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTAc < 7:188846/139‑1 (MQ=255) aGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGt > 4:76712/1‑101 (MQ=255) acaGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTc > 3:193945/1‑149 (MQ=255) caGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCg > 8:182397/1‑149 (MQ=255) aGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGt < 1:101350/149‑1 (MQ=255) aGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGt > 7:290606/1‑149 (MQ=255) aGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGt < 6:284983/149‑1 (MQ=255) gATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGTGAGGAc > 2:49679/1‑149 (MQ=255) tCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGGACGCAATGGGAGTGGTCGTGAGGACGGtt > 3:212059/1‑149 (MQ=255) gcCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGa > 4:150027/1‑123 (MQ=255) gcCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGa < 3:150027/123‑1 (MQ=255) gcCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGTGAGGACGGTTGGCCAGCg < 4:193945/149‑1 (MQ=255) gcCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGTGAGGACGGTTGGCCAGCg > 6:130692/1‑149 (MQ=255) gcCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGTGAGGACGGTTGGCCAGCg > 4:267495/1‑149 (MQ=255) ccAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGTGAGGACGGTTGGCCAGCg > 3:89115/1‑147 (MQ=255) ccAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGTGAGGACGGTTGGCCAGCg < 4:89115/147‑1 (MQ=255) gTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGTGAGGACGGTTGGCCAGCGgtgt > 1:255349/1‑148 (MQ=255) gCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGTGAGGACGGTTGGCCAGCGGTGTGATGGACATgg > 8:101699/1‑149 (MQ=255) gCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGTGAGGACGGTTGGCCAGCGGTGTGATGGACATgg > 8:120713/1‑149 (MQ=255) | AAGGCGTTCAGCGATGCGATGCGATGTACCAGGCCGTTTTCCAGCAGGAAGTCCAGCGCACGGTACACCGTGGGCGGCGCGGCGCGGCGGCCGTCCTGCTCACTGAGCACAGCGAGGATGTCGTAGGCGCCCAGTGGCTTGTGGCTCTGCCACACCAGCTCCAGCACACGGCGGCGCAGGGCTGTCAGGCGCAGGCCCTGGCGGGTGCACAAGGCGTCGGCTTCAGCCAGTGCGCTGTGTACGCAATGGGAGTGGTCGTGAGGACGGTTGGCCAGCGGTGTGATGGACATGG > NC_002947/124826‑125117 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |