Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 943,609 C→G 9.7% G671G (GGG→GGC) ‡ PP_0806 ← surface adhesion protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947943,6090CG 9.7% 172.4 / 9.3 62G671G (GGG→GGC) ‡PP_0806surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base C (29/26);  new base G (3/3);  total (33/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.56e-01

CATCCGCGGCGACGGTGCCGGTCGCGAGGATGTTGCCTGCCGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAACACGCCGGTCGGGCCGACCACGGCAGTGCC  >  NC_002947/943461‑943755
                                                                                                                                                    |                                                                                                                                                  
cATCCGCGGCGACGGTGCCGGTCGCGAGGATGTTGCCTGCCGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGAcc                                                                                                                                                    >  1:270552/1‑149 (MQ=255)
          gACGGTGCCGGTCGCGAGGATGTTGCCTGCCGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGatat                                                                                                                                          >  3:95552/1‑149 (MQ=255)
              gTGCCGGTCGCGAGGATGTTGCCTGCCGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCgg                                                                                                                                      >  3:4952/1‑149 (MQ=255)
                     tCGCGAGGATGTTGCCTGCCGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACGGGGTCGatacc                                                                                                                                         >  5:38852/1‑137 (MQ=255)
                     tCGCGAGGATGTTGCCTGCCGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACGGGGTCGatacc                                                                                                                                         <  6:38852/139‑3 (MQ=255)
                       gcgAGGATGTTGCCTGCCGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAAc                                                                                                                             >  5:206335/1‑149 (MQ=255)
                         gAGGATGTTGCCTGCCGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACGGGGTCGatacca                                                                                                                                        <  5:136277/136‑4 (MQ=255)
                         gAGGATGTTGCCTGCCGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACGGGGTCGatacca                                                                                                                                        >  6:136277/1‑133 (MQ=255)
                            gATGTTGCCTGCCGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTgcgc                                                                                                                        >  4:198468/1‑149 (MQ=255)
                                    ctgccGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGc                                                                                                                <  5:1713/149‑1 (MQ=255)
                                     tgccGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGc                                                                                                                >  5:5416/1‑148 (MQ=255)
                                       gactgTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGa                                                                                                              <  2:67576/144‑1 (MQ=255)
                                       ccGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGAt                                                                                                             >  1:185371/1‑149 (MQ=255)
                                           gTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATgtgt                                                                                                         >  3:26937/1‑149 (MQ=255)
                                                         cGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGACGGGGCTGCCGGTGGCGTGGTATCGACCACGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCg                                                                                           >  7:81797/1‑149 (MQ=255)
                                                             agagCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCg                                                                                       >  6:270201/1‑149 (MQ=255)
                                                                 ccGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGt                                                                                   >  6:262305/1‑149 (MQ=255)
                                                                  cGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTg                                                                                  <  2:185371/149‑1 (MQ=255)
                                                                  cGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTg                                                                                  <  6:206335/149‑1 (MQ=255)
                                                                      ttCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGtt                                                                                                        <  6:281681/123‑1 (MQ=255)
                                                                      ttCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGtt                                                                                                        >  5:281681/1‑123 (MQ=255)
                                                                        cGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGGTCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCtt                                                                              <  8:193319/147‑1 (MQ=255)
                                                                          ccTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTgcag                                                                          <  4:95552/149‑1 (MQ=255)
                                                                            tCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTgcagca                                                                        >  7:182655/1‑149 (MQ=255)
                                                                              gACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACt                                                                      >  1:32701/1‑149 (MQ=255)
                                                                              gACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACt                                                                      >  1:37274/1‑149 (MQ=255)
                                                                                       gTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTc                                                              >  2:58069/1‑148 (MQ=255)
                                                                                        ttGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCaa                                                            >  8:84982/1‑149 (MQ=255)
                                                                                                 ggCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCg                                                   >  6:157618/1‑149 (MQ=255)
                                                                                                  gCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGCTGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCgg                                                  >  8:119232/1‑149 (MQ=255)
                                                                                                  gCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCgg                                                  >  1:222874/1‑149 (MQ=255)
                                                                                                   cGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCggg                                                 <  2:32701/149‑1 (MQ=255)
                                                                                                   cGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCggg                                                 <  2:37274/149‑1 (MQ=255)
                                                                                                     aGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTCTCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGggtt                                               <  5:262305/149‑1 (MQ=255)
                                                                                                     aGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGggtt                                               <  3:198468/149‑1 (MQ=255)
                                                                                                          gATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGggttgaggt                                          >  1:181907/1‑149 (MQ=255)
                                                                                                            gcACCAAGGCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCGGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGggttgaggttg                                        <  4:324/148‑1 (MQ=255)
                                                                                                              aCCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCg                                                                                                 >  3:18258/1‑90 (MQ=255)
                                                                                                              aCCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCg                                                                                                 <  4:18258/90‑1 (MQ=255)
                                                                                                              aCCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGgttgaggttgag                                      <  6:271644/149‑1 (MQ=255)
                                                                                                              aCCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGCCTTGCAGCACTTCGCCGTCAACTTGTGGCGggttgaggttga                                       <  1:58069/148‑1 (MQ=255)
                                                                                                               ccAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGCTGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGttgaggttgagg                                     <  7:119232/149‑1 (MQ=255)
                                                                                                               ccAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGttgaggttgagg                                     >  4:144428/1‑149 (MQ=255)
                                                                                                               ccAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGttgaggttgagg                                     <  4:26937/149‑1 (MQ=255)
                                                                                                               ccAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGttgaggttgagg                                     >  2:177039/1‑149 (MQ=255)
                                                                                                                 aaGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCt                                   <  8:182655/149‑1 (MQ=255)
                                                                                                                  agtcagtcGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCt                                   >  4:163836/1‑148 (MQ=255)
                                                                                                                   gtcagtcGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTg                                  >  3:268755/1‑148 (MQ=255)
                                                                                                                      agtcGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAaca                              <  1:177039/149‑1 (MQ=255)
                                                                                                                                gCCGGTGGCGTGGTATCGACACCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAACACGCCGGTCgg                    >  6:270094/1‑149 (MQ=255)
                                                                                                                                 ccGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAACACGCCGGTCggg                   <  5:157618/149‑1 (MQ=255)
                                                                                                                                 ccGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAACACGCCGGTCgg                    <  2:222874/148‑1 (MQ=255)
                                                                                                                                      ggCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCg                                                                                                 <  2:283094/66‑1 (MQ=255)
                                                                                                                                      ggCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCg                                                                                                 >  1:283094/1‑66 (MQ=255)
                                                                                                                                         gTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAACACGCCGGTCGGGCCGACCAc           >  5:192015/1‑149 (MQ=255)
                                                                                                                                          ttgTATCGACCGCGTCGATATCGTGTGCGGTAAGTGCGGTGCTTGGCGATGTGTTGCCAGCGGCTTCGGTCGCCGTGGCTTGCAGCACTTCGGCGTCATCTTGTGGGGGGGTGAGGTTGAGGCTGAACACGCCGGTCGGGCCGACCACg          <  8:81797/147‑1 (MQ=18)
                                                                                                                                           ggTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAac                               >  4:99423/1‑127 (MQ=255)
                                                                                                                                           ggTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAac                               <  3:99423/127‑1 (MQ=255)
                                                                                                                                           gatATCGACGGGGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAACACGCCGGTCGGGCCGACCACgg         >  6:5519/3‑149 (MQ=255)
                                                                                                                                            gTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAACACGCCGGTCggg                   >  5:133759/1‑138 (MQ=255)
                                                                                                                                            gTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAACACGCCGGTCggg                   <  6:133759/138‑1 (MQ=255)
                                                                                                                                             tATCGACGGGGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAACACGCCGGTCGGGCCGACCACGGCa       <  5:5519/149‑1 (MQ=255)
                                                                                                                                                  aCCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAACACGCCGGTCGGGCCGACCACGGCAGTGcc  <  4:4952/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
CATCCGCGGCGACGGTGCCGGTCGCGAGGATGTTGCCTGCCGCGTCACGTACCTGCACGGTAGAGCCGGCTTCGCCTCGACCACTGAGTTGGCTGCCGGCGAGGCCGATCACCAAGTCAGTCGGGGCTGCCGGTGGCGTGGTATCGACCCCGTCGATATCCGGTGCGGTAACTGCGCTGCTTGGCGATGTGTTGCCAGCGGCATCGGTCGCCGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCGGGTTGAGGTTGAGGCTGAACACGCCGGTCGGGCCGACCACGGCAGTGCC  >  NC_002947/943461‑943755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑