| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,020,931 | G→C | 6.8% | A12G (GCC→GGC) | dppC ← | dipeptide ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,020,931 | 0 | G | C | 6.8% | 182.9 / 4.0 | 59 | A12G (GCC→GGC) | dppC | dipeptide ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base G (26/29); new base C (2/2); total (28/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.90e-01 | |||||||||||
GGGCGACCCAAGGCGCGAACAGCGCGCAGAAC‑ACCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGAATCACCAGGCAGGCGATCAACAGGATGC > NC_002947/1020788‑1021070 | gggCGACCCAAGGCGCGAACAGCGCGCAGAAC‑ACCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGt < 2:17705/149‑1 (MQ=255) gCGACCCAAGGCGCGAACAGCGCGCAGAAC‑GCCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGCCAGCCCGGTgg < 3:185632/149‑2 (MQ=255) cccAAGGCGCGAACAGCGCGCAGAACGACCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGacac > 1:2886/1‑149 (MQ=255) ccAAGGCGCGAACAGCGCGCAGAAC‑ACCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACg > 1:55656/1‑148 (MQ=255) cAAGGCGCGAACAGCGCGCAGAAC‑ACCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGa < 3:23369/149‑1 (MQ=255) cAAGGCGCGAACAGCGCGCAGAAC‑ACCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGa > 5:308201/1‑149 (MQ=255) aaGGCGCGAACACCCCGCAGAAC‑CCCACCCCGCCCCTGAACGCCCCGCCCACGCCCGCGCCCTTGGTGCGCGCGAAGGCCTGCCACCATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGAt < 4:165418/149‑1 (MQ=255) cgcgAACAGCGCGCAGAAC‑ACCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTg < 7:225919/149‑1 (MQ=255) aCAGCGCGCAGAAC‑ACCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATc < 3:251315/149‑1 (MQ=255) aGCGCGCAGAAC‑ACCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCgg < 2:55656/149‑1 (MQ=255) cgcAGAAC‑ACCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGt > 4:282107/1‑125 (MQ=255) cgcAGAAC‑ACCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGt < 3:282107/125‑1 (MQ=255) ac‑acCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCAt < 1:225189/148‑1 (MQ=255) c‑accacCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATgg > 6:211518/1‑149 (MQ=255) caccaGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGc > 3:44926/1‑147 (MQ=255) accaGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAg > 6:171341/1‑149 (MQ=255) acaTGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCt > 5:139552/1‑147 (MQ=255) gAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAgcgc > 1:276525/1‑149 (MQ=255) aggccaggccCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCt > 3:42563/1‑148 (MQ=255) gccaggccCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCtgat > 2:266220/1‑149 (MQ=255) aggccCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCggg > 3:182606/1‑117 (MQ=255) aggccCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCggg < 4:182606/117‑1 (MQ=255) ccATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATgg > 4:82165/1‑123 (MQ=255) ccATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATgg < 3:82165/123‑1 (MQ=255) aTGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGc > 7:216381/1‑149 (MQ=255) cgcgCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGA‑GGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGt > 5:145905/1‑149 (MQ=255) gcCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTg < 7:150124/149‑1 (MQ=255) cccTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTgg < 8:216381/149‑1 (MQ=255) ccTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGc < 5:1171/149‑1 (MQ=255) gttgCGCGCGAAGGCGTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAg < 6:308201/148‑1 (MQ=255) ttgCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAgg < 4:42563/148‑1 (MQ=255) ttgCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAgg < 2:2886/148‑1 (MQ=255) ttgCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGc > 3:206139/1‑149 (MQ=255) tgCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GGCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGcc < 7:206084/149‑1 (MQ=255) gcgcgcGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGcc < 4:206139/148‑1 (MQ=255) gcgcgAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCg > 6:59083/1‑147 (MQ=255) gcgAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTaga < 5:171341/149‑1 (MQ=255) aaGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGa < 5:59083/149‑1 (MQ=255) ttGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCAACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATTCGTGGGTTGGCCAGGCCGTAGAGGATGTc > 6:137727/1‑148 (MQ=255) aTTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGaa < 5:99852/149‑1 (MQ=255) tGTACGGGGATGGGTATAGCTGGCTGTGGTCCACATGGCTGGCCGGTGACACTGATTTTGGAATCGGGCGA‑GTGATGGCAAGGTCCTCAGCGCTGATGTCGGTTGGGTGGGTTGGCATGGGCGTAGAGGATGTCCACGACGAAGTTGa < 4:44926/148‑1 (MQ=255) gaCGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGGCCACGACGAAGTTGAcc < 8:211608/147‑1 (MQ=255) cGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGa < 2:276525/149‑1 (MQ=255) ggggAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTAGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGaa < 5:211518/149‑1 (MQ=255) ggAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGAAt > 2:77000/1‑148 (MQ=255) gAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGAATCa > 4:132728/1‑149 (MQ=255) ggggTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTTACACGGATTTTGGAATCGTGCTA‑GTCATGGCAAGGGCCTCAGCGCTTATGACGGATGCGTGGGTTGGCCAGGCCATAGAGGATGTCCACGACGAAGTTGACCAGAATCAcc < 6:139552/149‑1 (MQ=255) ggTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGAATCACcag < 1:77000/149‑1 (MQ=255) cAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGAATCACCaggcaggc > 4:199962/1‑148 (MQ=255) aGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGAATCACCAGGCAGGCGa > 5:40341/1‑149 (MQ=255) ggCTCTGGTCCACCGGGCTGGGCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGAATCACCAGGCAGGCGAt > 6:84750/1‑149 (MQ=255) gtgtcACCGGCCAGCCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGAATCACCAGGCAGGCGATCAACAg > 3:78297/5‑149 (MQ=255) tgtcACCGGCCAGCCCGGTGGCACGGATTTTGGAATCGGGCTAGGTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGcc > 1:214542/4‑95 (MQ=255) tgtcACCGGCCAGCCCGGTGGCACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGcc < 2:214542/91‑1 (MQ=255) gTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGAATCACCAGGCAGGCGATCAACa < 1:266220/147‑1 (MQ=255) gTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGAATCACCAGGCAGGCGATCAACAgg > 5:22859/1‑149 (MQ=255) aCCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGAATCACCAGGCAGGCGATCAACAGGATGc > 8:40388/1‑149 (MQ=255) cGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCGGTAGAGGATGTCCACGACGAAGTTGAc < 1:150061/115‑1 (MQ=255) cGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCAGTAGAGGATGTCCACGACGAAGTTGAc > 2:150061/1‑115 (MQ=255) | GGGCGACCCAAGGCGCGAACAGCGCGCAGAAC‑ACCACCAGGCACATGAAGGCCAGGCCCATGACCGCGCCCTTGTTGCGCGCGAAGGCTTGCCAGAATTCTTTGTACGGGGAGGGGTAGAGCAGGCTCTGGTCCACCGGGCTGGCCGGTGACACGGATTTTGGAATCGGGCTA‑GTCATGGCAAGGGCCTCAGCGCTGATGACGGATGCGTGGGTTGGCCAGGCCGTAGAGGATGTCCACGACGAAGTTGACCAGAATCACCAGGCAGGCGATCAACAGGATGC > NC_002947/1020788‑1021070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |