Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,243,725 | G→A | 7.3% | intergenic (+14/+85) | tsaA → / ← rnt | peroxiredoxin/ribonuclease T |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,243,725 | 0 | G | A | 7.3% | 238.3 / 5.8 | 82 | intergenic (+14/+85) | tsaA/rnt | peroxiredoxin/ribonuclease T |
Reads supporting (aligned to +/- strand): ref base G (40/36); new base A (2/4); total (42/40) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.27e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.36e-01 |
GGTTGACGCTCTGCAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCG > NC_002947/1243579‑1243864 | ggTTGACGCTCTGCAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGa > 3:37653/1‑148 (MQ=255) ttGACGCTCTGCAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATaaaa > 7:166575/1‑148 (MQ=255) cGCTCTGCAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAAcc < 5:313250/149‑1 (MQ=255) cGCTCTGCAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAAcc < 7:131166/149‑1 (MQ=255) gCTCTGCAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCg > 5:312899/1‑149 (MQ=255) gCTCTGCAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCg < 6:312899/149‑1 (MQ=255) gCTCTGCAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCg > 8:155429/1‑149 (MQ=255) gCTCTGCAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCg > 7:29526/1‑149 (MQ=255) gCTCCGCAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCg > 2:53988/1‑149 (MQ=255) ctctGCAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCgg < 7:155429/149‑1 (MQ=255) cAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTc < 8:10652/149‑1 (MQ=255) ccACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTgg < 7:112569/148‑1 (MQ=255) aCGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCg > 5:130047/1‑149 (MQ=255) agagCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGttt < 3:278368/149‑1 (MQ=255) gagCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATAAAAAAACCGGCCACGAAGGCCGGtttt < 8:166575/149‑1 (MQ=255) agCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGttttt > 7:116026/1‑149 (MQ=255) cGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGtttttagat > 5:162510/1‑145 (MQ=255) cGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGtttt < 6:162510/144‑1 (MQ=255) cGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTAt < 8:23049/149‑1 (MQ=255) ggCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATg < 6:130047/149‑1 (MQ=255) ggCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATAAAAAAACCGGCCACGAAGGCCGGTTTTTTCATg < 5:262059/149‑1 (MQ=38) ggCGAAGTGTCCCCTGCCAACTCGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGAGCCCGGTTTTTTTATg > 8:287032/1‑149 (MQ=255) gtgCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCtg > 4:209825/1‑149 (MQ=255) cccTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGa > 6:119653/1‑106 (MQ=255) cccTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGa < 5:119653/106‑1 (MQ=255) ccTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGcc > 8:41427/1‑149 (MQ=255) ccAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGc > 3:243066/1‑148 (MQ=255) aaCTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAAc < 2:124327/105‑1 (MQ=255) aaCTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAAc > 1:124327/1‑105 (MQ=255) tGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTc > 4:24197/1‑149 (MQ=255) aGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGgcgc > 8:95374/1‑149 (MQ=255) gACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGccc > 7:162949/1‑149 (MQ=255) gACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGccc > 1:297134/1‑149 (MQ=255) cAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCcgc < 8:29526/149‑1 (MQ=255) cAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCcgc < 8:162949/149‑1 (MQ=255) gggCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATAAAAAAACCGGCCACGAAGGCCGGTTTTTTCATGc < 4:65354/112‑1 (MQ=37) gggCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATAAAAAAACCGGCCACGAAGGCCGGTTTTTTCATGc < 4:69525/112‑1 (MQ=37) gggCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATAAAAAAACCGGCCACGAAGGCCGGTTTTTTCATGc > 3:69525/1‑112 (MQ=37) gggCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATAAAAAAACCGGCCACGAAGGCCGGTTTTTTCATGc > 3:65354/1‑112 (MQ=37) gggCAGGAAGGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAAGGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGaa < 5:118849/149‑1 (MQ=255) ggCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAAt < 5:176677/149‑1 (MQ=255) ggCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAAt > 6:180530/1‑149 (MQ=255) cATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCcgcg < 6:192466/144‑1 (MQ=255) cATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGaagat > 5:192466/1‑146 (MQ=255) cATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGc > 1:266611/1‑149 (MQ=255) cATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGc < 3:147280/149‑1 (MQ=255) aTGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGcc > 5:281556/1‑149 (MQ=255) aTGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGcc > 2:193712/1‑149 (MQ=255) aTGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGGTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGcg > 6:241336/1‑148 (MQ=255) gAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCtt > 6:290077/1‑149 (MQ=255) aaCGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCtt < 3:278678/148‑1 (MQ=255) cGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAg < 7:41427/149‑1 (MQ=255) ttCGCCTGAAGGCGTTGCTGCCTACCTGAGCCAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAg > 7:198636/1‑146 (MQ=255) cGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAg < 1:193712/147‑1 (MQ=255) gCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGcc > 5:46661/1‑84 (MQ=255) gCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGcc < 6:46661/84‑1 (MQ=255) cTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCaa > 6:93412/1‑149 (MQ=255) ggCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGtt < 4:37653/149‑1 (MQ=255) gCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGaagaggcc < 1:114623/132‑7 (MQ=255) gCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGaagaggcc > 2:114623/1‑126 (MQ=255) ttGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑aaa < 8:116026/149‑1 (MQ=255) tgcCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑a < 8:290336/143‑1 (MQ=255) tgcCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑a > 7:290336/1‑143 (MQ=255) gcCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATcgcg > 4:169671/1‑149 (MQ=255) ccTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATcgcg < 3:209825/148‑1 (MQ=255) ccTACCTGAGCGAGAACGAGGGCAAGCTGTAATTGGTGCGTGCATGAAAAAACCGGCCTTCGTGGCCTGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTAAGCAGATCAATCGTAG‑AAATcgcg < 4:215720/148‑1 (MQ=255) cTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATCGCGCCAgcc > 8:146590/1‑149 (MQ=255) cGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATCGCGCCAGCCGCCCa > 2:272031/1‑149 (MQ=255) gagaACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATCGCGCCAGCCGCCCAt > 1:268121/1‑149 (MQ=255) gagaACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATCGCGCCAACCGCCCAt < 7:156972/149‑1 (MQ=255) cGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGgcgcgc < 3:14930/94‑1 (MQ=255) cGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGgcgcgc > 4:14930/1‑94 (MQ=255) tGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGAGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCCCGAATGCCTTTAGCACATCAATCGTTG‑AAAACGAGCCAGCCGCCCAatactttc > 3:248145/1‑148 (MQ=255) cTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGtt < 7:146590/149‑1 (MQ=255) cTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGtt < 5:93412/149‑1 (MQ=255) tGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGtt > 2:108204/1‑148 (MQ=255) gTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAg > 1:491/1‑98 (MQ=255) gTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAg < 2:491/98‑1 (MQ=255) tAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTGAAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGa < 1:53988/149‑1 (MQ=255) tAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGtt < 1:272031/146‑1 (MQ=255) gcGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGAt > 3:57025/1‑94 (MQ=255) gcGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGAt < 4:57025/94‑1 (MQ=255) gTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCTGGCTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCg > 1:84051/1‑148 (MQ=255) | GGTTGACGCTCTGCAGTTCCACGAAGAGCACGGCGAAGTGTGCCCTGCCAACTGGAAAAAAGGCGACAAGGGCATGAACGCTTCGCCTGAAGGCGTTGCTGCCTACCTGAGCGAGAACGCTGGCAAGCTGTAATTGCTGCGTGCATGAAAAAACCGGCCTTCGTGGCCGGTTTTTTTATGCCTTCCTGTGCCGGCCT‑‑CTTCGCGGGCGCGCCCGCGAATGCCTTTAGCAGATCAATCGTTG‑AAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCG > NC_002947/1243579‑1243864 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |