Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,576,756 | G→C | 8.4% | intergenic (‑276/+37) | galP‑II ← / ← ttgC | porin‑like protein/efflux pump outer membrane protein TtgC |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,576,756 | 0 | G | C | 8.4% | 143.2 / 2.8 | 47 | intergenic (‑276/+37) | galP‑II/ttgC | porin‑like protein/efflux pump outer membrane protein TtgC |
Reads supporting (aligned to +/- strand): ref base G (25/18); new base C (2/2); total (27/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.64e-01 |
GCCGCAAACGGAACGGGGCGATAATCGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCTTGTACAGGTTGACCTCGCTGGTCAGCTGCGA > NC_002947/1576616‑1576900 | gccgcAAACGGAACGGGGCGATAATCGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGt > 3:240323/1‑149 (MQ=255) acggaacggGGCGATAATCGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCCTTATCGGTGGGCttt < 4:92464/149‑1 (MQ=255) cggaacggGGCGATAATCGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTc > 3:18599/1‑149 (MQ=255) acggGGCGATAATCGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCt > 7:283177/1‑149 (MQ=255) ggCGATAATCGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTg > 6:184339/1‑149 (MQ=255) cGATAATCGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGca < 8:283177/149‑1 (MQ=255) gATAATCGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGca > 6:296356/1‑148 (MQ=255) aTCGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTATTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCACCCGGCACAGGCAGTAAAAACAAAGCCCAACGATAAGGGTGGGCTTTCTGCTTTTGCAACAAg > 4:177226/1‑149 (MQ=255) cGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTGTGCTTTTGCAACAAGGc > 8:47465/1‑149 (MQ=255) aaCGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGcaac > 6:33654/1‑142 (MQ=255) aaCGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGcaac < 5:33654/142‑1 (MQ=255) aaCGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGcc > 3:282765/1‑148 (MQ=255) cGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGAt < 4:282765/149‑1 (MQ=255) ccGGTGGGGTAATAACTCTTCGGGGGCGGCCGCTTCGCGGGTTAACCCGCTCCTACCACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGAAAAGGGTGGGCTTTCTGCTTTCGCAACAAGGCCGATCAGCCttt < 7:47465/148‑1 (MQ=255) gttAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGttt > 6:34393/1‑149 (MQ=255) gttAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGttt > 6:29885/1‑149 (MQ=255) ttAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCa < 6:85802/134‑1 (MQ=255) ttAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCa > 5:85802/1‑134 (MQ=255) taaCTGTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTCGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCAcc > 7:279946/1‑149 (MQ=255) ggcCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTg < 1:122341/149‑1 (MQ=255) gcCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCATCGATGCCTGCTGGTTgg < 5:29885/149‑1 (MQ=255) gcCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCATCGATGCCTGCTGGTTgg < 5:34393/149‑1 (MQ=255) gcCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACAGATGCCTGCTGGTTgg > 2:110322/1‑149 (MQ=255) gcgGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCAATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCg < 5:296356/149‑1 (MQ=255) aCCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTc < 2:31513/149‑1 (MQ=255) ccGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCGACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCg > 8:249977/1‑148 (MQ=255) cTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAg < 4:240323/148‑1 (MQ=255) cTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGc > 2:279395/1‑149 (MQ=255) tACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGcc > 8:269379/1‑130 (MQ=255) tACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGcc < 7:269379/130‑1 (MQ=255) gacgGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTCCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCAcc > 7:14906/1‑149 (MQ=255) gcgcCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCGACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTATCAGCCACCGCCAAgc < 7:249977/148‑1 (MQ=255) gcgcCCAGCCGGAACAGGCATTAAAAACAAAGCCCACCGATAAGGGTTGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAgc < 8:279946/148‑1 (MQ=255) gcCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGcc < 7:108138/149‑1 (MQ=255) cccAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCt > 3:169066/1‑149 (MQ=255) cAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCTTg > 2:300240/1‑149 (MQ=255) aGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCTTg > 7:54090/1‑148 (MQ=255) cAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCTTGTACAGGTTGACCt < 8:54090/149‑1 (MQ=255) tAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGc < 5:43560/106‑1 (MQ=255) tAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGc > 6:43560/1‑106 (MQ=255) aaaaCAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCTTGTACAGGTTGACCTCGCTg < 4:18599/149‑1 (MQ=255) gcagaaaGCCCACCCTTATCGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCTTGTACAgg < 7:42815/132‑1 (MQ=255) gcagaaaGCCCACCCTTATCGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCTTGTACAgg > 8:42815/5‑136 (MQ=255) aaaCAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCTTGTACAGGTTGACCTCGCTgg > 5:201992/1‑149 (MQ=255) agaaaGCCCACCCTTATCGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCTTGTACAGGTTGACCTCGCTGGt > 8:110058/3‑148 (MQ=255) cACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCTTGTACAGGTTGACCTCGCTGGTCAGCTGCGa > 5:19051/1‑149 (MQ=255) cACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGACCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCTTGTACAGGTTGACCTCGCTGGTCAGCTGCGa > 7:199135/1‑149 (MQ=255) | GCCGCAAACGGAACGGGGCGATAATCGAACGGAATGTTCCGGTTGGTTAATAACTCTTCTGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCTTGCGCCCAGCCGGCACAGGCAGTAAAAACAAAGCCCACCGATAAGGGTGGGCTTTCTGCTTTTGCAACAAGGCCGATCAGCCTTTCGGTGTTTCCACCGATGCCTGCTGGTTGGCCTGCCCGGTCTGCTCGTACCAGCCACCGCCAAGCGCCTTGTACAGGTTGACCTCGCTGGTCAGCTGCGA > NC_002947/1576616‑1576900 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |