Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,611,155 | T→C | 6.8% | Y308C (TAC→TGC) | PP_1412 ← | 3‑hydroxyisobutyryl‑CoA hydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,611,155 | 0 | T | C | 6.8% | 171.3 / 2.6 | 59 | Y308C (TAC→TGC) | PP_1412 | 3‑hydroxyisobutyryl‑CoA hydrolase |
Reads supporting (aligned to +/- strand): ref base T (31/24); new base C (2/2); total (33/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01 |
CTTGGCAAAATGCGCCTCGACTACCGCCGTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCATGCAGACGGTGGCCGGCATCTGCCAGCAATGGGTCGTCATGCTGCTTGAGCCTTTC > NC_002947/1611010‑1611300 | cTTGGCAAAATGCGCCTCGACTACCGCCGTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTAtt < 4:113573/149‑1 (MQ=255) gcCTCGACTACCGCCGTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAacac > 4:227614/1‑149 (MQ=255) ccTCGACTACCGCCGTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACAcc < 4:110782/149‑1 (MQ=255) gACTACCGCCGTCGGCACTTGCGCCACATCAGGCCATTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTgc < 3:9808/148‑1 (MQ=255) tACCGCCGTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGcc > 6:37662/1‑148 (MQ=255) cgccgTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTgc < 3:128869/142‑1 (MQ=255) cgccgTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTgc > 4:128869/1‑142 (MQ=255) cgccgTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAAc > 7:182213/1‑148 (MQ=255) cgccgTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAAc < 4:301754/148‑1 (MQ=255) cgccgTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAAc > 3:301754/1‑148 (MQ=255) ccgTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCCGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGCATTCCATc < 6:165602/128‑1 (MQ=255) ccgTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGCATTCCATc < 6:161426/128‑1 (MQ=255) ccgTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGCATTCCATc > 5:165602/1‑128 (MQ=255) ccgTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGCATTCCATc > 5:161426/1‑128 (MQ=255) tCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAgg > 8:263789/1‑149 (MQ=255) ggCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCAGGAACACCTGCGCCAACGACAGGTa > 4:177102/1‑149 (MQ=255) cgcCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGcc < 7:178923/148‑1 (MQ=255) gcCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCaa < 8:240930/131‑1 (MQ=255) gcCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCaa > 7:240930/1‑131 (MQ=255) aTCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGa > 7:207272/1‑149 (MQ=255) aTCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGa < 5:54995/149‑1 (MQ=255) aGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCt > 5:284795/1‑149 (MQ=255) gCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGCATCTgg > 6:260499/1‑148 (MQ=255) gCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCCGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGc < 3:177102/149‑1 (MQ=255) gTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTcc > 8:232582/1‑148 (MQ=255) tGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTgcgc < 8:200856/113‑1 (MQ=255) tGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTgcgc > 7:200856/1‑113 (MQ=255) aGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCccagacc < 7:232582/149‑1 (MQ=255) cgcgGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCccagaccag < 8:182213/149‑1 (MQ=255) cgGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGAt < 7:263789/149‑1 (MQ=255) gTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCccagacc > 4:214706/1‑139 (MQ=255) gTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCccagacc < 3:214706/139‑1 (MQ=255) gTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGcc < 4:145015/148‑1 (MQ=255) gTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGCATCTGGTCTGGGAGCAGATccgccg < 5:260499/149‑1 (MQ=255) tCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAg > 6:236158/1‑149 (MQ=255) ttGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCgg > 7:75832/1‑149 (MQ=255) cagcagGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTcc < 6:250502/121‑1 (MQ=255) cagcagGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTcc > 5:250502/1‑121 (MQ=255) cagcagGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAAc > 1:241741/1‑149 (MQ=255) gcagGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAAccc > 7:77144/1‑149 (MQ=255) gCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCAt < 5:236158/149‑1 (MQ=255) gCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCAt < 3:227614/149‑1 (MQ=255) aCGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCCGGCAACCCTCATGCAGACCGTg > 1:220353/1‑149 (MQ=255) aCGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTAAGGCTCATTCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTAACGCGCACGGCGGATCTGATCCCAGACCAGATGCGCCGTCATCTGGCAACCAAAATGCAGACtgtg > 1:216190/1‑149 (MQ=255) cTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGCAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCATGCAGACGGTGGCCg > 1:248486/1‑149 (MQ=255) cACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTGTTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCaa > 2:125205/1‑125 (MQ=255) cACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTCTTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCaa < 1:125205/125‑1 (MQ=255) tGAATTCAGGGTGGCGGCAACAGTTCAGGCTAATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCATGCAGACGGTGGCCGGCATCt > 5:200418/1‑149 (MQ=255) gTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCATGCAGACGGTGGCCGGCATCTGCCAGCAATg < 2:241741/149‑1 (MQ=255) ggcAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGcc > 7:274311/1‑95 (MQ=255) ggcAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGcc < 8:274311/95‑1 (MQ=255) aaCAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCAAGCAGACGGTGGCCGGCATCTGCCAGCAATGGGTCGTCa > 8:86392/1‑149 (MQ=255) cAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCATGCAGACGGTGGCCGGCATCTGCCAGCAATGGGTCGTCAtg < 7:86392/149‑1 (MQ=255) ggCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCATGCAGACGGTGGCCGGCATCTGCCAGCAATGGGTCGTCATGCTGCtt > 7:278587/1‑148 (MQ=255) tCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCATGCAGACGGTGGCCGGCATCTGCCAGCAATGGGTCGTCATGCTGCTTGAGc > 8:189103/1‑149 (MQ=255) aTGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCATGCAGACGGTGGCCGGCATCTGCCAGCAATCGGTCGTCATGCTTCTTGAGCCt > 6:278621/1‑149 (MQ=255) gCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCATGCAGACGGTGGCCGGCATCTGCCAGCAATGGGTCGTCAtgc > 7:24633/1‑136 (MQ=255) gCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCATGCAGACGGTGGCCGGCATCTGCCAGCAATGGGTCGTCAtgc < 8:24633/136‑1 (MQ=255) gTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCATGCAGACGGTGGCCGGCATCTGCCAGCAATGGGTCGTCATGCTGCTTGAGCCTTTc > 1:122631/1‑147 (MQ=255) | CTTGGCAAAATGCGCCTCGACTACCGCCGTCGGCACTTGCGCCACATCAGGCCAGTGCCAGCGCGGCTGGTTGTCTTTGTCCAGCAGGCGAGCGCGCACGCCTTCACTGAATTCAGGGTGGCGGCAACAGTTCAGGCTCATGCTGTATTCCATCTGGAACACCTGCGCCAACGACAGGTACCGCGCCCGGCGGATCTGCTCCCAGACCAGATGCGCCGTCAGCGGGCAACCCTCATGCAGACGGTGGCCGGCATCTGCCAGCAATGGGTCGTCATGCTGCTTGAGCCTTTC > NC_002947/1611010‑1611300 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |