| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,628 | C→T | 6.8% | D378D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,628 | 0 | C | T | 6.8% | 274.0 / 7.7 | 102 | D378D (GAC→GAT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (45/50); new base T (2/5); total (47/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.88e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
AGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAA > NC_002947/195482‑195771 | aGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGacac < 6:110933/149‑1 (MQ=37) cGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGAcacca > 1:4012/1‑149 (MQ=38) tCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACcgc < 5:92271/148‑1 (MQ=39) ccAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGa > 5:201509/1‑149 (MQ=39) cAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCCGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGCCCACGATCAA‑CGACTCGGTCGCCACCACCCCCGCGAc > 4:292718/1‑149 (MQ=255) cAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAACCGACTCGGTCGACACCACCACCGCGa < 1:3204/149‑1 (MQ=255) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGAcc < 6:201509/149‑1 (MQ=39) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGAcc < 6:179778/149‑1 (MQ=39) cccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGa > 1:280897/1‑149 (MQ=39) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACg > 6:165515/1‑149 (MQ=39) ggCCAATGACGTCTACAACAAAGGTTCGACCGTCAGCGTCACCATCGAGAACGCCCCCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACgg > 2:275951/1‑149 (MQ=255) gcgaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGc < 4:243145/146‑1 (MQ=0) cAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCATACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGa < 6:16797/149‑1 (MQ=38) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 1:233748/1‑149 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 5:301999/1‑149 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 3:118184/1‑149 (MQ=17) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc < 8:112928/149‑1 (MQ=17) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 3:268587/1‑148 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 7:94285/1‑148 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGc < 4:89493/135‑1 (MQ=17) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGc > 3:89493/1‑135 (MQ=17) cGGTTCTACCGTCAGCGTAACAATCGATAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 6:18029/149‑1 (MQ=255) tgcGACCGGCAGCGTCACCATCGCGAACGCCACCGGGGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCAGGATCAA‑CGACTTGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 8:137910/147‑1 (MQ=11) tCGACCGTCAGCGTCACCATCGAGAACGCCTCCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg > 1:26227/1‑149 (MQ=37) tCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg > 7:84235/1‑149 (MQ=17) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 1:1664/149‑1 (MQ=37) aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 3:64953/1‑149 (MQ=17) cGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa < 6:248474/149‑1 (MQ=38) cGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTAGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa > 5:248474/1‑149 (MQ=38) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 6:153109/1‑148 (MQ=17) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 3:116316/1‑148 (MQ=17) aGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc < 5:165515/149‑1 (MQ=39) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 1:147499/141‑1 (MQ=17) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 2:147499/1‑141 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTg < 1:44925/138‑1 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTg > 2:44925/1‑138 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTaca < 4:118184/148‑1 (MQ=17) ccATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGt > 7:279956/1‑117 (MQ=39) ccATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGt < 8:279956/117‑1 (MQ=39) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 1:287307/1‑149 (MQ=17) aTCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAGCCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 1:226531/1‑149 (MQ=255) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCTAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt < 6:301999/149‑1 (MQ=12) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 8:212522/1‑148 (MQ=39) gagaACGCCCCCGGCGGTAATTTCGAGCCACTGACCCCGAAGCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 8:288846/148‑1 (MQ=255) gagaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 3:100822/148‑1 (MQ=39) gagaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAc > 8:186616/1‑149 (MQ=39) gagaACGCCAAAGGCTGTAATTTCGAGCAACTGACCACGAATCCGA‑CCCCTGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 8:284829/148‑1 (MQ=11) aaCGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 2:26227/149‑1 (MQ=39) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg < 2:195182/117‑1 (MQ=12) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 1:195182/1‑117 (MQ=12) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CGCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 2:233748/149‑1 (MQ=21) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 4:64953/149‑1 (MQ=17) ccACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc < 1:128812/149‑1 (MQ=39) cggcggTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 7:212522/149‑1 (MQ=39) gcggTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCt < 4:268587/149‑1 (MQ=39) cggTAATTTCGAGCAACTGACCCCGAATCCGA‑TCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTg < 1:116620/149‑1 (MQ=12) cggTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTg < 6:180735/149‑1 (MQ=39) gTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc < 8:180413/149‑1 (MQ=17) aTTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑a < 1:35141/148‑1 (MQ=17) aTTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑a < 2:78144/148‑1 (MQ=21) tCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCGGCCC‑AGACg > 6:32366/1‑149 (MQ=12) aaCTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 7:269955/138‑1 (MQ=40) aaCTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc > 8:269955/1‑138 (MQ=40) aCTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTTACCCTGAGCAACCCTGCCC‑AGACGCCGGtga < 6:184485/149‑3 (MQ=2) aCCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCg < 1:275951/148‑1 (MQ=40) aCCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGt > 3:138916/1‑149 (MQ=255) cccGAATCCTA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGa < 2:280897/149‑1 (MQ=255) cccGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTg < 2:185986/112‑1 (MQ=17) cccGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTg > 1:185986/1‑112 (MQ=17) cccGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTg > 5:80019/1‑148 (MQ=255) cccGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 4:39307/119‑1 (MQ=39) ccGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGaa > 6:170132/1‑149 (MQ=255) cGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTGACCGTGacc < 6:267958/149‑3 (MQ=2) cGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAATTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTGACCGTGacc > 6:20923/1‑147 (MQ=255) gAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAAcc > 4:195720/1‑149 (MQ=255) cGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTc > 4:288932/1‑148 (MQ=255) gA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCa < 4:138916/149‑1 (MQ=255) a‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCaa > 3:11127/1‑149 (MQ=255) a‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATAACTTACACCGTGCCCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCaa > 4:216254/1‑149 (MQ=255) cccGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACg < 8:84235/149‑1 (MQ=38) cGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGc > 4:99339/1‑149 (MQ=39) cTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAAc < 8:17394/134‑1 (MQ=39) cTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAAc > 7:17394/1‑134 (MQ=39) aGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa < 5:170132/147‑1 (MQ=37) aGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg > 7:213957/1‑100 (MQ=33) aGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg < 8:213957/100‑1 (MQ=33) aGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa < 2:226531/147‑1 (MQ=39) tttaTCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAc < 7:33951/146‑1 (MQ=255) gATCAA‑CGACTCGGTCGGCACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 1:301721/1‑149 (MQ=255) gATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 2:191622/1‑149 (MQ=255) tCAA‑CGACTCGGTCGGCACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt < 2:301721/149‑1 (MQ=255) tCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt < 4:116316/149‑1 (MQ=255) cGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa > 2:297316/1‑137 (MQ=255) cGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa < 1:297316/137‑1 (MQ=255) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 2:287307/149‑1 (MQ=255) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt < 3:195720/148‑1 (MQ=255) ggTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAAGACGCCGGTAACCGTGAACCTGTCCAACGGc < 1:188865/125‑1 (MQ=255) ggTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 1:55773/1‑148 (MQ=39) gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaa < 5:153109/149‑1 (MQ=255) tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGCCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTACAACGGCCAAACGATTACCGTTCAAGCCGGTaa > 3:218208/1‑148 (MQ=14) | AGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑AGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAA > NC_002947/195482‑195771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |