Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,676,160 | C→G | 8.5% | intergenic (+22/‑38) | hom → / → thrC | homoserine dehydrogenase/threonine synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,676,160 | 0 | C | G | 8.5% | 184.3 / 7.1 | 59 | intergenic (+22/‑38) | hom/thrC | homoserine dehydrogenase/threonine synthase |
Reads supporting (aligned to +/- strand): ref base C (27/27); new base G (3/2); total (30/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.88e-01 |
GTGCCAATGATCCTGGTGACCCATGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCAGCGACGGCGGCCTGTACGTGCCGGAAAACCTGCC > NC_002947/1676013‑1676304 | gTGCCAATGATCCTGGTGACCCATGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGccgccc > 4:265922/1‑149 (MQ=255) ccAATGATCCTGGTGACCCATGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCcgcg > 5:277066/1‑149 (MQ=255) cAATGATCCTGGTGACCCATGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCcgcgc < 5:78453/149‑1 (MQ=255) aaTGATCCTGGTGACCCATGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCcgcgcg > 3:39133/1‑149 (MQ=255) tCCTGGTGACCCATGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGcggcccc < 6:106829/149‑1 (MQ=255) cTGGTGACCCATGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCGCGGGcggcccgtc < 3:121589/149‑4 (MQ=255) gTGACCCATGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGTTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGcggccccggc < 6:284557/147‑1 (MQ=255) gTGACCCATGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGcggccccggc < 6:277066/147‑1 (MQ=255) ccccAAGGCGGGGGCGAGCCGCGTATCAATGACGCCATCGTCGCCCTGGACGCCCTGCAGGACGTGGTCGGCACGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCa < 8:50048/147‑1 (MQ=255) aCCCATGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCa < 2:12914/148‑1 (MQ=255) cATGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCAt < 4:39133/149‑1 (MQ=255) aTGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATc > 4:269140/1‑149 (MQ=255) aTGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATc < 3:9244/149‑1 (MQ=255) gCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGaa < 5:136710/149‑1 (MQ=255) gCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGaa < 5:739/149‑1 (MQ=255) ggTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGtt < 5:277128/149‑1 (MQ=255) gTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGttt < 3:265922/149‑1 (MQ=255) gcagcGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCAcc > 3:207472/1‑149 (MQ=255) aTCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATgcgc > 3:303169/1‑149 (MQ=255) aTCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATgcgc > 5:15376/1‑149 (MQ=255) aaTGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACCTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCAACCAAGGTTTGCACCCATgcccaa > 7:57568/1‑144 (MQ=255) aTGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCtata < 5:180525/149‑1 (MQ=255) aTCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTAcc > 3:122733/1‑149 (MQ=255) tGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCa > 3:201343/1‑134 (MQ=255) tGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCa < 4:201343/134‑1 (MQ=255) ggAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGc > 3:8048/1‑149 (MQ=255) gAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAg < 3:269140/146‑1 (MQ=255) aaGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCAc < 3:161119/149‑1 (MQ=255) ccTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGc > 2:239504/1‑149 (MQ=255) cTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCa < 7:122247/97‑1 (MQ=255) cTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTCCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCa > 8:122247/1‑97 (MQ=255) gACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAAt > 1:143887/1‑149 (MQ=255) gTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTc < 4:122733/149‑1 (MQ=255) gTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGaa < 4:207472/149‑1 (MQ=255) gTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGaa < 6:15376/149‑1 (MQ=255) gTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGa < 5:233648/148‑1 (MQ=255) ggCAAGGTTGTGCGCATTCGCTTCGATCAGCTCAACTAACAAATTTTGCCGACGGGCCGCCCGCGGGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCtat < 6:268792/107‑1 (MQ=255) ggCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATAGAAGGTTTGAACCCATGCGCtat > 5:268792/1‑107 (MQ=255) cAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGGACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGt > 2:272028/1‑149 (MQ=255) cAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGt > 3:203571/1‑149 (MQ=255) gTTGGGCGCATTCGGGTCTAGCAGACAAATTAAAAAAAATTGCCTCGGGGCCGCCGGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGtgctg < 2:143887/149‑1 (MQ=255) tgCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTgctgg > 7:196913/1‑149 (MQ=255) cgcATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGaa < 2:29867/127‑1 (MQ=255) cgcATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGaa > 1:29867/1‑127 (MQ=255) gcATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTgctggctg > 4:243788/1‑149 (MQ=255) gcgTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGGACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGctggcctg < 1:272028/148‑1 (MQ=255) cGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCAg > 7:212341/1‑149 (MQ=255) gcTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCAGCGAcgg > 7:105898/1‑149 (MQ=255) tCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCg < 2:16029/113‑1 (MQ=255) tCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCg > 1:16029/1‑113 (MQ=255) tCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCAGCGAcggcg > 3:141236/1‑149 (MQ=255) cAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCAGCGAcggcgg > 4:178999/1‑149 (MQ=255) aCAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGtgc < 6:73544/115‑1 (MQ=255) aCAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGtgc > 5:73544/1‑115 (MQ=255) cGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCAGCGACGGCGGCCTGTACGTGCCGGaa > 6:4523/1‑148 (MQ=255) cGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCAGCGACGGCGGCCTGTACGTGCCGGaa > 5:45636/1‑148 (MQ=255) cggggCCGCGCGGGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCAGCGACGGCGGCCTGTACGTGCCGGAAAAc > 3:69391/3‑149 (MQ=255) ggggCCGCGCGGGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCa > 3:200133/2‑119 (MQ=255) ggggCCGCGCGGGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCa < 4:200133/118‑1 (MQ=255) ggggCCGCGCGGGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCAGCGACGGCGGCCTGTACGTGCCGGAAAAcc > 6:292824/2‑149 (MQ=255) ccgcccgcGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCAGCGACGGCGGCCTGTACGTGCCGGAAAACCTGcc > 7:182688/1‑149 (MQ=255) ccgcccgcGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCAGCGACGGCGGCCTGTACGTGCCGGAAAACCTGc > 4:54346/1‑148 (MQ=255) | GTGCCAATGATCCTGGTGACCCATGGCGTGGTCGAGCAGCGTATCAATGACGCCATCGTCGCTCTGGAAGCCCTGCAGGACGTGGTCGGCAAGGTTGTGCGCATTCGCGTCGAGCAGCTCAACTAACAAATATTGCCGACGGGCCGCCCGCGCGGCCCCGGCCCCAGCATCGAAGGTTTGCACCCATGCGCTATATCAGTACCCGCGGCCAGGCACCGGCCCTGAATTTCGAAGACGTGCTGCTGGCTGGCCTGGCCAGCGACGGCGGCCTGTACGTGCCGGAAAACCTGCC > NC_002947/1676013‑1676304 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |