Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,703,250 G→C 16.5% intergenic (+99/‑68) lysS → / → PP_1497 lysine‑‑tRNA ligase/TetR family transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,703,2500GC16.5% 120.4 / 10.3 53intergenic (+99/‑68)lysS/PP_1497lysine‑‑tRNA ligase/TetR family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base G (22/22);  new base C (4/5);  total (26/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAA  >  NC_002947/1703103‑1703397
                                                                                                                                                    |                                                                                                                                                    
gTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGc                                                                                                                                                     >  7:229027/1‑149 (MQ=255)
   gATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCtt                                                                                                                                                  >  4:178272/1‑149 (MQ=255)
     tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTGCTGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGCCtttgt                                                                                                                                               <  3:156776/149‑4 (MQ=38)
     tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGt                                                                                                                                                <  5:285066/149‑1 (MQ=255)
     tCCGCGACGTCATCCTGTTCCCACACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGt                                                                                                                                                <  2:187432/149‑1 (MQ=255)
           aCGTCATCCTGGTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTGCTGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGCCTTTGTAGGAGc                                                                                                                                          <  6:17734/149‑1 (MQ=37)
            cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCg                                                                                                                                         <  2:11834/149‑1 (MQ=255)
             gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCgg                                                                                                                                        <  4:52781/149‑1 (MQ=255)
             gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCgg                                                                                                                                        <  4:36647/149‑1 (MQ=255)
              tCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCggg                                                                                                                                       <  5:241053/149‑1 (MQ=255)
                aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGt                                                                                                                                      >  1:72156/1‑149 (MQ=255)
                aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGCCTTTGTAGGAGCGGGt                                                                                                                                      <  2:214853/148‑1 (MQ=255)
                 tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGAGCGGGTTTa                                                                                                                                   <  5:228434/149‑1 (MQ=255)
                  ccTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTa                                                                                                                                   <  3:178272/149‑1 (MQ=255)
                   cTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTCGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTAc                                                                                                                                  >  3:236567/1‑149 (MQ=255)
                        cccGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCcgc                                                                                                                              <  4:131022/148‑1 (MQ=255)
                         ccGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCcgcg                                                                                                                             >  5:90096/1‑148 (MQ=255)
                          cGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCcg                                                                                                                               >  4:51486/1‑145 (MQ=255)
                          cGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCcg                                                                                                                               <  3:51486/145‑1 (MQ=255)
                          cGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTGGTAGGAGCGGGGTTACCcgcg                                                                                                                             >  7:283477/1‑147 (MQ=255)
                                      cGCAGGCCTTAGGGAGCTCAACCAGCCGCCTTGCGTGGCGGCTTTTTCTTCCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGCCTTGTCGGAGCGGGTTTACCCGCGAAGGGGCCAGCACt                                                                                                               <  2:239351/149‑1 (MQ=25)
                                                ttttagCTTAACGAGCCGCTTTTCGAGGGGGTTTTTTTTTGCTTTAAGTTTTTTGTGGTCTGTCCCGGCCTGTGCGCGGTAAACCCCGCTCATAAAATGGCTTTTTTGTTGGGGTTTTACCCGCGAAGGGGCCAGCACTGACGAAacac                                                                                                    <  4:236567/145‑1 (MQ=255)
                                                      cTGAACGCGCCGCCTTGCGCGGCGGCTTTTTCTTGCCTGACGCTTTTTGTTGTCCGTCCCGGCCTCTTCGGGGGTAACCCCGCTCCTACAACGCCCTTGTCGGCGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCAt                                                                                              <  8:49987/149‑1 (MQ=255)
                                                         accGAGCCGCCTTTCGTGGCGGCTTTTTCTTGCCTTAAGCTTTATGTTGTCAGTCCCGGCCTCTTCGCGGTAAAACCCGCTCCTACAACGGCCTTTTAGGTGCGGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAg                                                                                           <  2:72156/147‑1 (MQ=255)
                                                         aaCGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGa                                                                                            <  8:229027/148‑1 (MQ=255)
                                                                         ttggcggaTTTTTCTGGCCTGACGTTTTTTGTTGTCCGTACGGGCCTCTTCGCGGGTAACCCGGCTCCTACAACGGCCTTGTTGTAGGGGGTTTACCCGAGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATcccc                                                                                   <  2:223170/140‑1 (MQ=255)
                                                                         gAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGAGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATaccc                                                                                   >  1:223170/1‑142 (MQ=255)
                                                                              ggcTTTTTCTTCCCTGAACTTTTATGTTGGCAGTCCCGGCCTCTTCGCGGGAAACCCCGCTCCTACAAAGGCCTTGTCGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGc                                                                       <  3:182508/149‑1 (MQ=37)
                                                                                cTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGt                                                                                                                                      <  2:281026/85‑1 (MQ=255)
                                                                                cTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGt                                                                                                                                      >  1:281026/1‑85 (MQ=255)
                                                                                 tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCGCACATAAAAAAGCCTTTTAGGAACGGGTTTACCCCCCAAGGGGCCACCACTGACGAAAAACCCCCAAGAGGTAAGACCCCTGACAcccccc                                                                      >  7:43651/1‑147 (MQ=255)
                                                                                   tttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCAACAAAGGCCGTGGAGGAGCGGGGTTAGCCGCCGAGGGGCCGCCCCTGGACCAAACCCCCCCTGAGGGTGCGCCCCGGGCACCCGCCCTGc                                                                  >  8:137006/1‑149 (MQ=16)
                                                                                    ttCTTGCATTAAGTTTTATGTTGTCATTACGGGCCTCTTCGCGGTTAAACCGGATCCAACAAAGGCCTTGTAGGAGGGGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGc                                                                  <  6:90096/148‑1 (MQ=255)
                                                                                              aaGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGgc                                                       >  5:304706/1‑149 (MQ=255)
                                                                                                  tttATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGcgccg                                                   >  6:247980/1‑149 (MQ=255)
                                                                                                    tATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTg                                                                                                                                                 <  4:175967/54‑1 (MQ=255)
                                                                                                    tATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTg                                                                                                                                                 >  3:175967/1‑54 (MQ=255)
                                                                                                       gttgtCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACCCCCCCCTGAGGTTTCCCCCGGGACCCCCGCCATGCCTGCCCAAGGCGCCGCCgg                                               >  2:227599/1‑148 (MQ=37)
                                                                                                           tCAGTACCGGCCTCTTCGCGGGTAAAACCGCTACTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCAAGAGGTATCACACGTGACACCCCCCAGGCCTGACCAAGGCGCCGCCGGCATCg                                          >  8:155167/1‑149 (MQ=37)
                                                                                                                     ccTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGt                                >  2:224180/1‑149 (MQ=255)
                                                                                                                        ctTCGCGGGTAAACCCGCTCCTACAAGGCCTTTGTAGGAGCGGGTTTACCCACGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGc                             >  5:167398/1‑149 (MQ=255)
                                                                                                                           ggcgGGTAACCCCGCTCCTACAAAGCCCTTGTTGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGcc                            <  8:283477/146‑1 (MQ=255)
                                                                                                                             ttgtaaaaCCCGCTCATAAAATGCCTTTTTAGTTGCGGTTTAACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCTCCGTCTCCGaaa                        <  8:43651/144‑1 (MQ=255)
                                                                                                                                   aaCCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTAACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc                  <  1:227599/149‑1 (MQ=255)
                                                                                                                                    aCCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc                  >  4:178154/1‑148 (MQ=255)
                                                                                                                                     cccGCTCCTACAAGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa                >  2:18871/1‑149 (MQ=255)
                                                                                                                                      ccGCTCCTACAAGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa                >  6:75837/1‑148 (MQ=37)
                                                                                                                                      ccGCTCCTACAAGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCATGCaa                >  1:53290/1‑148 (MQ=37)
                                                                                                                                      ccGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa                >  6:249486/1‑148 (MQ=255)
                                                                                                                                      ccGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATACCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCAACGCCCCAGCCGTCGCCGAAAGCGTGCaa                >  4:13567/1‑148 (MQ=255)
                                                                                                                                        gCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAc             >  4:6086/1‑149 (MQ=255)
                                                                                                                                                  aGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAg                                                                                           >  7:184714/1‑61 (MQ=255)
                                                                                                                                                  aGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAg                                                                                           <  8:184714/61‑1 (MQ=255)
                                                                                                                                                   ggCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa  <  3:6086/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAA  >  NC_002947/1703103‑1703397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: