Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,808,075 | G→A | 9.2% | V42V (GTG→GTA) | kdsA‑I → | 2‑dehydro‑3‑deoxyphosphooctonate aldolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,808,075 | 0 | G | A | 9.2% | 148.8 / 3.2 | 54 | V42V (GTG→GTA) | kdsA‑I | 2‑dehydro‑3‑deoxyphosphooctonate aldolase |
Reads supporting (aligned to +/- strand): ref base G (28/21); new base A (2/3); total (30/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.46e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGAAGAACAAGGCCTGATCGATGACCCAGAAGATCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTCGAAGAGATCAAGCGCACCTTCAACGTGCCGG > NC_002947/1807930‑1808223 | agaagaACAAGGCCTGATCGATGACCCAGAAGATCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGc < 3:114366/147‑1 (MQ=255) gaagaaCAAGGCCTGAACGATGACCCAGAAGATCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCggg > 7:84249/1‑149 (MQ=255) gaaCAAGGCCTGATCGATGACCCAGAAGATCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTACGGGATa > 1:210001/1‑149 (MQ=255) aaCAAGGCCTGATCGATGACCCAGAAGATCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTAc > 7:106953/1‑149 (MQ=255) aGGCCTGATCGATGACCCAGAAGATCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCTGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCgag < 7:106775/149‑1 (MQ=255) aGGCCTGATCGATGACCCAGAAGATCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCgag < 8:22829/149‑1 (MQ=255) gCCTGATCGATGACCCAGAAGATCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGaa < 8:170679/149‑1 (MQ=255) aTGACCCAGAAGATCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTAt > 8:255212/1‑149 (MQ=255) cccAGAAGATCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCg > 2:117188/1‑149 (MQ=255) agaagaTCATTCGCGTCGGTAACATCGGGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTAc < 5:278092/149‑1 (MQ=255) agaagaTCATTCGCGTCGGTAACATCGAGATCGCCACCGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTAc > 1:243735/1‑149 (MQ=255) agaagaTCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTACGGGATACCGAGCTTCTCGGTAACCCGCAc < 2:86237/149‑1 (MQ=39) agaTCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGGCTGCGAAGAGTACGTACGGGATACCGAGCTTCTCGGTAACCCGCACgta < 1:40670/149‑2 (MQ=38) aTTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCa < 1:117188/148‑1 (MQ=255) ttCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGaa < 6:87299/124‑1 (MQ=255) ttCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGaa > 5:87299/1‑124 (MQ=255) tCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGAAGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGt > 8:52975/1‑149 (MQ=255) gTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTc < 2:48431/149‑1 (MQ=255) cATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGAGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACATGTTCAAGGCCAGTTTCGAc > 7:61420/1‑148 (MQ=255) tCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGAc > 2:306480/1‑146 (MQ=255) tCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACaa < 1:306480/148‑1 (MQ=255) tCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAg < 7:255212/149‑1 (MQ=255) gagaTCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTACGGGATACCGAGCTTCTCGGt < 2:263788/114‑1 (MQ=255) gagaTCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTACGGGATACCGAGCTTCTCGGt > 1:263788/1‑114 (MQ=255) cGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTAACGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAAcc > 6:228802/1‑149 (MQ=255) aaCGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTtc > 2:13277/1‑149 (MQ=255) aaGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCgg > 7:180056/1‑148 (MQ=255) ccTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTAcc > 7:209130/1‑149 (MQ=255) cTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCg > 5:207540/1‑149 (MQ=255) tGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGt > 5:222616/1‑149 (MQ=255) tGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGCGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGt > 2:84596/1‑149 (MQ=255) gTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGANGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTg > 1:96411/1‑149 (MQ=255) cggcggCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGcc > 2:291778/1‑149 (MQ=255) gcggcATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGACTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGATTCCACAAGGCCAACCGTTCGTCGGAAACGTCCTACCATGGCCCt > 3:44909/1‑149 (MQ=255) aTGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCAt > 5:94116/1‑149 (MQ=255) gAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATg > 1:127662/1‑148 (MQ=255) aaCGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATgg < 8:209130/148‑1 (MQ=255) aCGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATgg > 4:40341/1‑147 (MQ=255) aCGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGaa < 1:291778/149‑1 (MQ=255) tGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAgggg > 3:202484/1‑149 (MQ=255) gAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAgggg < 6:222616/147‑1 (MQ=255) aTCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGa < 6:207540/149‑1 (MQ=255) ccGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTg > 6:170268/1‑145 (MQ=255) aCCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTc < 8:106953/149‑1 (MQ=255) cTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTCGa < 5:170268/149‑1 (MQ=255) gCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTCGaa < 4:202484/147‑1 (MQ=255) gAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTCGAAGAGATc > 4:283493/1‑148 (MQ=255) ggTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTCGAAGAGATCAAgc > 7:163970/1‑149 (MQ=255) ggTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTCGAAGAGATCAAgc < 2:127662/149‑1 (MQ=255) ggTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCCTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTCGAAGAGATCAAgc > 2:153356/1‑149 (MQ=255) cgacgaGTACGTGCGGGTTCCCGAGAAGCGCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTCGAAGAGATCAAGCGCAcc < 6:156398/148‑1 (MQ=255) cGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTACCGTCCTACCGTGGCCCGGGCATGGAAGAGGGGCTGAAGATCTTCGAAGAGATCAAGCGCAcc > 5:156398/1‑148 (MQ=255) cGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTCGAAGAGATCAAGCGCACCt < 1:13277/149‑1 (MQ=255) gTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTCGAAGAGATCAAGCGCACCTTCAACg < 3:40341/149‑1 (MQ=255) gCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTCGAAGAGATCAAGCGCACCTTCAACGTGCCgg < 2:96411/149‑1 (MQ=255) gCGGGTTACCGAGAAGCACGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCAAACCGTTCGTAGGTAACGTCCTACCGTGGCCCTGGCATCGAAGAGGGGCTGAAGAACTTCGAAGAGATCAAGCGCACCTTCAACGTGCCgg > 3:255871/1‑149 (MQ=255) | AGAAGAACAAGGCCTGATCGATGACCCAGAAGATCATTCGCGTCGGTAACATCGAGATCGCCAACGACAAGCCGTTCGTCCTGTTCGGCGGCATGAACGTTCTGGAATCCCGTGACCTGGCGATGAAGGTCTGCGAAGAGTACGTGCGGGTTACCGAGAAGCTCGGTATCCCGTACGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGTTCGTCGGTAACGTCCTACCGTGGCCCTGGCATGGAAGAGGGGCTGAAGATCTTCGAAGAGATCAAGCGCACCTTCAACGTGCCGG > NC_002947/1807930‑1808223 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |